CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.304130 *(Cucumis sativus)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02701 (zf-Dof)	IPR003851	Cucsa.304130	T171522_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.932	0.932
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.898	0.898
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.898	0.898
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.898	0.898
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.898	0.898
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.881	0.881
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.864	0.864
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.864	0.864
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.864	0.864
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.847	0.847
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.831	0.831
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.831	0.831
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.831	0.831
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.814	0.814
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.814	0.814
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.814	0.814
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.797	0.797
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.797	0.797
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.780	0.780
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.780	0.780
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.780	0.780
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.780	0.780
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.780	0.780
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.780	0.780
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.780	0.780
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.780	0.780
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.780	0.780
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.780	0.780
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.780	0.780
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.780	0.780
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.763	0.763
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.763	0.763
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.763	0.763
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.763	0.763
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.763	0.763
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.763	0.763
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.763	0.763
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.763	0.763
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.746	0.746
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.746	0.746
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.746	0.746
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.746	0.746
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.746	0.746
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.746	0.746
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.729	0.729
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.712	0.712
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.712	0.712
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.712	0.712
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.695	0.695
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.695	0.695
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.678	0.678
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.678	0.678
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.678	0.678
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.678	0.678
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.661	0.661
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.661	0.661
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.661	0.661
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.661	0.661
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.661	0.661
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.661	0.661
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.661	0.661
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.644	0.644
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.644	0.644
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.644	0.644
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.644	0.644
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.644	0.644
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.644	0.644
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.644	0.644
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.644	0.644
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.644	0.644
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.644	0.644
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.644	0.644
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.644	0.644
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.644	0.644
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.644	0.644
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.627	0.627
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.627	0.627
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.627	0.627
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.627	0.627
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.627	0.627
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.627	0.627
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.610	0.610
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.559	0.559
DOF4.2 M06856_2.00	Arabidopsis thaliana	NNHWWWRCCTTTTTNNHNH	DNDNNAAAAAGGYWWWDNN	Dap-seq OMalley et al.(2016) dof42_col_a	0.508	0.508
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.304130.1	Dof	40	98	EQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRP

Links
Other Dof family TFs
Other *Cucumis sativus* TFs

1982 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB001179	Anopheles albimanus	AALB001179	I
AALB001246	Anopheles albimanus	AALB001246	N
AARA010781	Anopheles arabiensis	AARA010781	I
ACEP15304	Atta cephalotes	ACEP15304	I
ACEP15310	Atta cephalotes	ACEP15310	I
ACHR005005	Anopheles christyi	ACHR005005	I
ACUA026425	Anopheles culicifacies	ACUA026425	I
ADIR009743	Anopheles dirus	ADIR009743	N
ADIR011362	Anopheles dirus	ADIR011362	I
AEPI004837	Anopheles epiroticus	AEPI004837	I
AFAF004706	Anopheles farauti	AFAF004706	I
Alligator_sinensis_CCG006492.1	Alligator sinensis	Alligator_sinensis_CCG006492.1	I
Alligator_sinensis_CCG007145.1	Alligator sinensis	Alligator_sinensis_CCG007145.1	I
Alligator_sinensis_CCG007145.2	Alligator sinensis	Alligator_sinensis_CCG007145.2	I
ALUE_0000098101	Ascaris lumbricoides	ALUE_0000098101	I
ALUE_0001653201	Ascaris lumbricoides	ALUE_0001653201	I
AMAM016481	Anopheles maculatus	AMAM016481	I
AMIN006553	Anopheles minimus	AMIN006553	I
ANCCAN_01421	Ancylostoma caninum	ANCCAN_01421	I
AQUA004184	Anopheles quadriannulatus	AQUA004184	I
ASIS007645	Anopheles sinensis	ASIS007645	N
Cflo_06473--XP_394848.3_APIME	Camponotus floridanus	Cflo_06473--XP_394848.3_APIME	I
CLEC006621	Cimex lectularius	CLEC006621	I
CLEC009745	Cimex lectularius	CLEC009745	I
Cmyd_10010530	Chelonia mydas	Cmyd_10010530	I
CPIJ006494	Culex quinquefasciatus	CPIJ006494	I
CPIJ009206	Culex quinquefasciatus	CPIJ009206	I
CPIJ019791	Culex quinquefasciatus	CPIJ019791	I
CpipJ_CPIJ006494	Culex pipiens	CpipJ_CPIJ006494	I
CpipJ_CPIJ009206	Culex pipiens	CpipJ_CPIJ009206	I
CpipJ_CPIJ019791	Culex pipiens	CpipJ_CPIJ019791	I
DAPPUDRAFT_65647	Daphnia pulex	DAPPUDRAFT_65647	I
ENSGMOG00000003366	Gadus morhua	ENSGMOG00000003366	I
ENSMEUG00000011758	Macropus eugenii	ENSMEUG00000011758	I
ENSMODG00000025571	Monodelphis domestica	ENSMODG00000025571	I
ENSONIG00000005161	Oreochromis niloticus	ENSONIG00000005161	I
ENSTNIG00000005618	Tetraodon nigroviridis	ENSTNIG00000005618	I
ENSTNIG00000013141	Tetraodon nigroviridis	ENSTNIG00000013141	I
ENSTRUG00000007849	Takifugu rubripes	ENSTRUG00000007849	I
ENSTSYG00000008085	Tarsius syrichta	ENSTSYG00000008085	I
GL14130	Drosophila persimilis	FBgn0151735	I
Hba_09392	Heterorhabditis bacteriophora	Hba_09392	N
HHAL001219-PA	Halyomorpha halys	HHAL001219-PA	I
HPBE_0000479901	Heligmosomoides bakeri	HPBE_0000479901	I
HPLM_0000491501	Haemonchus placei	HPLM_0000491501	I
ISCW003096	Ixodes scapularis	ISCW003096	I
KGM_02686	Danaus plexippus	KGM_02686	I
LCUP011796	Lucilia cuprina	LCUP011796	I
OESDEN_18680	Oesophagostomum dentatum	OESDEN_18680	I
OFLC_0000380401	Onchocerca flexuosa	OFLC_0000380401	I
Ogr06456	Ophisaurus gracilis	Ogr06456	I
Ogr15337	Ophisaurus gracilis	Ogr15337	I
PAX3	Callithrix jacchus	ENSCJAG00000012088	I
PAX3	Homo sapiens	ENSG00000135903	D
PAX3	Macaca mulatta	ENSMMUG00000020409	I
PAX5	Tupaia belangeri	ENSTBEG00000007983	I
PAX5	Tursiops truncatus	ENSTTRG00000006049	I
PAX6	Homo sapiens	ENSG00000007372	D
pax6a	Danio rerio	ENSDARG00000103379	I
pax6b	Danio rerio	ENSDARG00000045936	I
PAX7	Homo sapiens	ENSG00000009709	D
PAX7	Procavia capensis	ENSPCAG00000005303	I
Pax7	Dipodomys ordii	ENSDORG00000011854	I
PAX8	Vicugna pacos	ENSVPAG00000003973	I
PAX9	Pteropus vampyrus	ENSPVAG00000003728	I
PEQ_0000701201	Parascaris equorum	PEQ_0000701201	I
RPRC001180	Rhodnius prolixus	RPRC001180	I
RPRC008887	Rhodnius prolixus	RPRC008887	I
SBAD_0001213701	Soboliphyme baturini	SBAD_0001213701	I
SCUD_0000788801	Schistosoma curassoni	SCUD_0000788801	I
SINV15897	Solenopsis invicta	SINV15897	I
Sjc_0077510	Schistosoma japonicum	Sjc_0077510	I
SMAR008441	Strigamia maritima	SMAR008441	I
SMAR015380	Strigamia maritima	SMAR015380	I
SMTD_0001918101	Schistosoma mattheei	SMTD_0001918101	I
SNAPOd2T00016386001	Oikopleura dioica	SNAPOd2T00016386001	I
SROB_0000822501	Schistosoma rodhaini	SROB_0000822501	I
YQE_12759	Dendroctonus ponderosae	YQE_12759	N

Cucsa.304130 (Cucumis sativus) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1982 Related TFs

Cucsa.304130 **(Cucumis sativus)
Dof**