ENSLACG00000014031 (Latimeria chalumnae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 ENSLACG00000014031 T172672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.919 0.919
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.919 0.919
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.919 0.919
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.919 0.919
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.919 0.919
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.919 0.919
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.787 0.787
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.787 0.787
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.787 0.787
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.603 0.603
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.603 0.603
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.603 0.603
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.529 0.529
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.529 0.529
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.529 0.529
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.529 0.529
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000015934 E2F 145 213
ENSLACP00000015934 E2F 285 369

Links

Other E2F family TFs
Other Latimeria chalumnae TFs

351 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29912.m005337 Ricinus communis 29912.m005337 I 0.000
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.000
BGIOSGA002941 Oryza indica BGIOSGA002941 N 0.000
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.000
Bo2g032920 Brassica oleracea Bo2g032920 I 0.000
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.000
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.000
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.000
Cla017100 Citrullus lanatus Cla017100 I 0.000
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.000
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.000
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.000
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.000
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.000
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.000
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.000
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.000
MDP0000119495 Malus domestica MDP0000119495 I 0.000
MDP0000252899 Malus domestica MDP0000252899 I 0.000
MDP0000782908 Malus domestica MDP0000782908 I 0.000
mgf018190m Mimulus guttatus mgf018190m I 0.000
OB05G15870 Oryza brachyantha OB05G15870 I 0.000
OBART05G06380 Oryza barthii OBART05G06380 I 0.000
OGLUM01G06710 Oryza glumaepatula OGLUM01G06710 N 0.000
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.000
ONIVA01G07090 Oryza nivara ONIVA01G07090 N 0.000
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.000
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.000
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.000
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.000
OS05G0199800 Oryza sativa OS05G0199800 I 0.000
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.000
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.000
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.000
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.000
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.000
PK15505.1 Cannabis sativa PK15505.1 D 0.000
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.000
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.000
Sb09g006196 Sorghum bicolor Sb09g006196 N 0.000
Si024546m.g Setaria italica Si024546m.g I 0.000
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.000
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.000