fgenesh2_pg.scaffold_288000044 (Branchiostoma floridae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 fgenesh2_pg.scaffold_288000044 T173844_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.646 0.646
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.646 0.646
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.646 0.646
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.646 0.646
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.646 0.646
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.646 0.646
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.646 0.646
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.646 0.646
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.646 0.646
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.515 0.515
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.515 0.515
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.515 0.515
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_288000044 E2F 224 253
fgenesh2_pg.scaffold_288000044 E2F 256 341

Links

Other E2F family TFs
Other Branchiostoma floridae TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014015 Ricinus communis 30147.m014015 I 0.535
Aan_R005623 Calypte anna Aan_R005623 I 0.471
Aan_R006648 Calypte anna Aan_R006648 I 0.478
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.657
Afo_R014077 Aptenodytes forsteri Afo_R014077 I 0.471
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.657
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.657
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I 0.471
Aqu1.202157 Amphimedon queenslandica Aqu1.202157 I 0.455
Aquca_002_00349 Aquilegia coerulea Aquca_002_00349 I 0.465
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.485
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.485
Bo1g074680 Brassica oleracea Bo1g074680 I 0.515
Bo8g076700 Brassica oleracea Bo8g076700 I 0.525
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.525
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.434
Bra033767 Brassica rapa Bra033767 I 0.515
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.495
Brh_R005316 Buceros rhinoceros Brh_R005316 I 0.636
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.657
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.525
CAOG_00276 Capsaspora owczarzaki CAOG_00276 I 0.485
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.525
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.525
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.485
Ca_15301 Cicer arietinum Ca_15301 I 0.525
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.449
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.495
Cla019450 Citrullus lanatus Cla019450 I 0.485
CMT433C Cyanidioschyzon merolae CMT433C I 0.535
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.646
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.646
Contig13804.0.g1 Oxytricha trifallax Contig13804.0.g1 I 0.465
Contig14878.0.g72 Oxytricha trifallax Contig14878.0.g72 I 0.465
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.515
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.475
DEL1 Arabidopsis lyrata fgenesh2_kg.5__1169__AT3G48160.2 I 0.505
E2F7 Anolis carolinensis ENSACAG00000005414 I 0.471
E2F7 Bos taurus ENSBTAG00000016931 I 0.646
E2F7 Canis familiaris ENSCAFG00000005718 I 0.657
E2F7 Callithrix jacchus ENSCJAG00000019162 I 0.471
E2F7 Cavia porcellus ENSCPOG00000007375 I 0.471
e2f7 Danio rerio ENSDARG00000008986 I 0.449
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.646
E2F7 Erinaceus europaeus ENSEEUG00000000248 I 0.515
E2F7 Echinops telfairi ENSETEG00000014750 I 0.471
E2F7 Felis catus ENSFCAG00000010756 I 0.471
E2F7 Homo sapiens ENSG00000165891 D 0.471
e2f7 Gasterosteus aculeatus ENSGACG00000019468 I 0.463
E2F7 Gorilla gorilla ENSGGOG00000012645 I 0.471
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.646
E2F7 Meleagris gallopavo ENSMGAG00000010943 I 0.646
E2F7 Microcebus murinus ENSMICG00000013872 I 0.646
E2F7 Myotis lucifugus ENSMLUG00000012116 I 0.471
E2F7 Macaca mulatta ENSMMUG00000022846 I 0.471
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.646
E2f7 Mus musculus ENSMUSG00000020185 D 0.471
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.646
E2F7 Otolemur garnettii ENSOGAG00000010821 I 0.471
E2F7 Ochotona princeps ENSOPRG00000001896 I 0.471
E2F7 Procavia capensis ENSPCAG00000000596 I 0.646
E2F7 Pan troglodytes ENSPTRG00000005245 I 0.471
E2F7 Pteropus vampyrus ENSPVAG00000000288 I 0.471
E2f7 Rattus norvegicus ENSRNOG00000026252 I 0.471
E2F7 Sorex araneus ENSSARG00000004122 I 0.471
E2F7 Sus scrofa ENSSSCG00000000950 I 0.636
E2F7 Tupaia belangeri ENSTBEG00000005417 I 0.471
E2F7 Taeniopygia guttata ENSTGUG00000007515 I 0.471
e2f7 Tetraodon nigroviridis ENSTNIG00000005126 I 0.463
e2f7 Takifugu rubripes ENSTRUG00000001843 I 0.646
E2F7 Tursiops truncatus ENSTTRG00000000110 I 0.471
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.646
e2f7 Xenopus tropicalis XB-GENE-1018445 I 0.485
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.677
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.636
E2F8 Bos taurus ENSBTAG00000017446 I 0.626
E2F8 Canis familiaris ENSCAFG00000009431 I 0.471
E2F8 Choloepus hoffmanni ENSCHOG00000006322 I 0.471
E2F8 Callithrix jacchus ENSCJAG00000006811 I 0.463
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.646
e2f8 Danio rerio ENSDARG00000057323 I 0.449
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.471
E2f8 Dipodomys ordii ENSDORG00000000040 I 0.463
E2F8 Equus caballus ENSECAG00000016457 I 0.463
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.646
E2F8 Felis catus ENSFCAG00000010706 I 0.471
E2F8 Homo sapiens ENSG00000129173 D 0.471
e2f8 Gasterosteus aculeatus ENSGACG00000017086 I 0.456
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.471
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.626
E2F8 Microcebus murinus ENSMICG00000017089 I 0.646
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.478
E2F8 Macaca mulatta ENSMMUG00000010853 I 0.471
E2F8 Monodelphis domestica ENSMODG00000009029 I 0.471
E2f8 Mus musculus ENSMUSG00000046179 I 0.636
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.646
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.471
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.471
e2f8 Oryzias latipes ENSORLG00000000786 I 0.626
E2F8 Procavia capensis ENSPCAG00000003996 I 0.434
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.646
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.471
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.646
E2F8 Sus scrofa ENSSSCG00000013352 I 0.471
E2F8 Tupaia belangeri ENSTBEG00000005521 I 0.646
E2F8 Taeniopygia guttata ENSTGUG00000015857 I 0.657
e2f8 Tetraodon nigroviridis ENSTNIG00000009615 I 0.463
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.463
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.636
E2F8 Vicugna pacos ENSVPAG00000012423 I 0.548
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.463
E2FE Arabidopsis thaliana AT3G48160 D 0.515
E2FF Arabidopsis thaliana AT3G01330 I 0.434
ENSAMEG00000007247 Ailuropoda melanoleuca ENSAMEG00000007247 I 0.471
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.471
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.657
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.478
ENSAPLG00000014506 Anas platyrhynchos ENSAPLG00000014506 I 0.471
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.646
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.626
ENSCING00000014484 Ciona intestinalis ENSCING00000014484 I 0.636
ENSCSAG00000003998 Chlorocebus sabaeus ENSCSAG00000003998 I 0.471
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I 0.471
ENSDORG00000003404 Dipodomys ordii ENSDORG00000003404 I 0.456
ENSECAG00000017963 Equus caballus ENSECAG00000017963 I 0.471
ENSFALG00000001625 Ficedula albicollis ENSFALG00000001625 I 0.485
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.646
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.478
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I 0.646
ENSGMOG00000019253 Gadus morhua ENSGMOG00000019253 I 0.478
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.626
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.657
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.646
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.636
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.646
ENSMEUG00000013506 Macropus eugenii ENSMEUG00000013506 I 0.510
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.471
ENSMPUG00000017468 Mustela putorius furo ENSMPUG00000017468 I 0.471
ENSNLEG00000004897 Nomascus leucogenys ENSNLEG00000004897 I 0.471
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I 0.471
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.471
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.467
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I 0.463
ENSONIG00000012070 Oreochromis niloticus ENSONIG00000012070 I 0.636
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I 0.626
ENSP00000323246 Macaca fascicularis ENSP00000323246 I 0.471
ENSP00000379463 Macaca fascicularis ENSP00000379463 I 0.471
ENSPANG00000004929 Papio anubis ENSPANG00000004929 I 0.471
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I 0.471
ENSPFOG00000003272 Poecilia formosa ENSPFOG00000003272 I 0.471
ENSPFOG00000005584 Poecilia formosa ENSPFOG00000005584 I 0.636
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.626
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I 0.471
ENSPPYG00000004791 Pongo abelii ENSPPYG00000004791 I 0.471
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.646
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.646
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.646
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I 0.471
ENSSTOG00000007887 Ictidomys tridecemlineatus ENSSTOG00000007887 I 0.471
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.478
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.471
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.471
ENSXMAG00000006252 Xiphophorus maculatus ENSXMAG00000006252 I 0.471
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I 0.626
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.505
F775_15908 Aegilops tauschii F775_15908 I 0.485
fgenesh1_pg.1__455 Bigelowiella natans fgenesh1_pg.1__455 I 0.444
fgenesh1_pg.scaffold_121000063 Physcomitrella patens fgenesh1_pg.scaffold_121000063 I 0.535
gene09494-v1.0-hybrid Fragaria vesca gene09494-v1.0-hybrid I 0.475
Gfo_R003950 Geospiza fortis Gfo_R003950 I 0.657
Gfo_R003976 Geospiza fortis Gfo_R003976 I 0.646
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.525
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.525
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.505
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.515
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.505
GSPATT00002803001 Paramecium tetraurelia GSPATT00002803001 I 0.495
GUITHDRAFT_133924 Guillardia theta GUITHDRAFT_133924 I 0.515
gw.270.22.1 Branchiostoma floridae gw.270.22.1 I 0.493
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.566
HelroG187766 Helobdella robusta HelroG187766 I 0.535
ISCW021939 Ixodes scapularis ISCW021939 I 0.586
L798_00191 Zootermopsis nevadensis L798_00191 I 0.525
LotgiG168338 Lottia gigantea LotgiG168338 I 0.646
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.485
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.505
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.515
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.525
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.505
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.505
MCINX015669 Melitaea cinxia MCINX015669 I 0.465
MDP0000248838 Malus domestica MDP0000248838 I 0.434
mgf016204m Mimulus guttatus mgf016204m I 0.485
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.485
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.515
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I 0.471
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.478
OB02G38920 Oryza brachyantha OB02G38920 I 0.475
OBART02G31930 Oryza barthii OBART02G31930 I 0.485
OBART06G09260 Oryza barthii OBART06G09260 I 0.495
Ocbimv22037571m.g Octopus bimaculoides Ocbimv22037571m.g I 0.667
Ogr19156 Ophisaurus gracilis Ogr19156 I 0.471
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.485
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.485
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.485
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.485
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.485
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.485
OS02G0739700 Oryza sativa OS02G0739700 I 0.485
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.535
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.465
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.475
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.515
PITG_06416 Phytophthora infestans PITG_06416 I 0.495
Pm024664 Prunus mume Pm024664 I 0.475
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.515
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.525
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.636
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.646
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.505
Sakowv30003251m.g Saccoglossus kowalevskii Sakowv30003251m.g I 0.667
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.515
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.515
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.465
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.515
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.667
Tal_R000495 Tyto alba Tal_R000495 I 0.471
Tal_R008430 Tyto alba Tal_R008430 I 0.478
TCM_011971 Theobroma cacao TCM_011971 I 0.525
TCM_017926 Theobroma cacao TCM_017926 I 0.475
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.455
Traes_6AL_DD0E18465 Triticum aestivum Traes_6AL_DD0E18465 I 0.434
Traes_7BS_CCA195724 Triticum aestivum Traes_7BS_CCA195724 I 0.485
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.444
XP_002164164.1 Hydra magnipapillata XP_002164164.1 I 0.505
XP_002942881 Xenopus tropicalis XP_002942881 I 0.456