Thhalv10013977m.g (Eutrema salsugineum)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Thhalv10013977m.g T174023_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.875 0.875
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.875 0.875
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.875 0.875
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.875 0.875
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.691 0.691
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.691 0.691
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.691 0.691
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.566 0.566
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.566 0.566
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.566 0.566
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.566 0.566
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.566 0.566
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.566 0.566
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.544 0.544
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.544 0.544
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.544 0.544
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10013977m E2F 12 76
Thhalv10013977m E2F 137 216

Links

Other E2F family TFs
Other Eutrema salsugineum TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015370 Calypte anna Aan_R015370 I
Afo_R015728 Aptenodytes forsteri Afo_R015728 I
Alligator_sinensis_CCG003524.1 Alligator sinensis Alligator_sinensis_CCG003524.1 I
Brh_R011889 Buceros rhinoceros Brh_R011889 I
Cmyd_10010643 Chelonia mydas Cmyd_10010643 I
ENSAMEG00000001062 Ailuropoda melanoleuca ENSAMEG00000001062 I
ENSAPLG00000009825 Anas platyrhynchos ENSAPLG00000009825 I
ENSBTAG00000023372 Bos taurus ENSBTAG00000023372 I
ENSCAFG00000003715 Canis familiaris ENSCAFG00000003715 I
ENSCSAG00000007889 Chlorocebus sabaeus ENSCSAG00000007889 I
ENSECAG00000002896 Equus caballus ENSECAG00000002896 I
ENSETEG00000007657 Echinops telfairi ENSETEG00000007657 I
ENSFALG00000008694 Ficedula albicollis ENSFALG00000008694 I
ENSFCAG00000022893 Felis catus ENSFCAG00000022893 I
ENSMEUG00000006154 Macropus eugenii ENSMEUG00000006154 I
ENSMGAG00000015965 Meleagris gallopavo ENSMGAG00000015965 I
ENSMLUG00000026821 Myotis lucifugus ENSMLUG00000026821 I
ENSMMUG00000018805 Macaca mulatta ENSMMUG00000018805 I
ENSMMUP00000024750 Macaca fascicularis ENSMMUP00000024750 I
ENSMPUG00000013620 Mustela putorius furo ENSMPUG00000013620 I
ENSNLEG00000014496 Nomascus leucogenys ENSNLEG00000014496 I
ENSOARG00000016462 Ovis aries ENSOARG00000016462 I
ENSOCUG00000026053 Oryctolagus cuniculus ENSOCUG00000026053 I
ENSP00000281043-D1 Bos grunniens ENSP00000281043-D1 I
ENSPANG00000019058 Papio anubis ENSPANG00000019058 I
ENSPPYG00000012635 Pongo abelii ENSPPYG00000012635 I
ENSPSIG00000012289 Pelodiscus sinensis ENSPSIG00000012289 I
ENSSTOG00000012252 Ictidomys tridecemlineatus ENSSTOG00000012252 I
ENSSTOG00000021587 Ictidomys tridecemlineatus ENSSTOG00000021587 I
ENSVPAG00000007723 Vicugna pacos ENSVPAG00000007723 I
Gfo_R015246 Geospiza fortis Gfo_R015246 I
MYCN Ornithorhynchus anatinus ENSOANG00000012832 I
MYCN Cavia porcellus ENSCPOG00000020263 I
Mycn Dipodomys ordii ENSDORG00000009906 I
MYCN Homo sapiens ENSG00000134323 D
MYCN Gallus gallus ENSGALG00000016462 I
MYCN Gorilla gorilla ENSGGOG00000005130 I
MYCN Loxodonta africana ENSLAFG00000015181 I
MYCN Tursiops truncatus ENSTTRG00000005135 I
MYCN Taeniopygia guttata ENSTGUG00000013104 I
MYCN Sus scrofa ENSSSCG00000008618 I
Mycn Rattus norvegicus ENSRNOG00000051372 I
MYCN Pteropus vampyrus ENSPVAG00000010355 I
MYCN Pan troglodytes ENSPTRG00000011672 I
MYCN Ochotona princeps ENSOPRG00000004369 I
MYCN Otolemur garnettii ENSOGAG00000010927 I
MYCN Anolis carolinensis ENSACAG00000011351 I
MYCN Microcebus murinus ENSMICG00000013903 I
Mycn Mus musculus ENSMUSG00000037169 D
Myotis_brandtii_MYCN_10020172 Myotis brandtii Myotis_brandtii_MYCN_10020172 I
Ogr12112 Ophisaurus gracilis Ogr12112 I
Pvit_07093 Pogona vitticeps Pvit_07093 I
Tal_R000146 Tyto alba Tal_R000146 I