Alligator_sinensis_CCG000599.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG000599.1 T174796_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.877 0.877
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.821 0.821
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.821 0.821
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.821 0.821
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.792 0.792
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.755 0.755
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.755 0.755
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG000599.1 EBF1 20 125

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA002866 Anopheles arabiensis AARA002866 I 0.742
ACHR005921 Anopheles christyi ACHR005921 I 0.731
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.792
AFUN004907 Anopheles funestus AFUN004907 I 0.758
ASTEI11507 Anopheles stephensi ASTEI11507 I 0.722
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.877
D917_06660 Trichinella nativa D917_06660 I 0.717
EBF1 Equus caballus ENSECAG00000007964 I 0.821
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.783
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.821
EBF1 Ochotona princeps ENSOPRG00000000119 N 0.811
EBF1 Oryzias latipes ENSORLG00000007471 I 0.821
ebf1a Danio rerio ENSDARG00000099849 I 0.802
ebf1b Danio rerio ENSDARG00000069196 I 0.792
EBF2 Bos taurus ENSBTAG00000040390 I 0.792
EBF2 Canis familiaris ENSCAFG00000008918 I 0.792
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.792
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.792
EBF2 Homo sapiens ENSG00000221818 D 0.792
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.755
EBF2 Gallus gallus ENSGALG00000000242 I 0.792
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.792
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.792
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.792
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.792
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.792
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.792
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.792
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.792
EBF2 Sus scrofa ENSSSCG00000009655 I 0.792
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.792
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.736
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.745
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.774
ebf2.S Xenopus laevis XB-GENE-971141 I 0.755
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.868
EBF3 Echinops telfairi ENSETEG00000014060 I 0.877
EBF3 Homo sapiens ENSG00000108001 D 0.877
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.877
Ebf3 Mus musculus ENSMUSG00000010476 I 0.877
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.877
EBF3 Procavia capensis ENSPCAG00000000348 N 0.840
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.877
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.877
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.830
ebf3a Oryzias latipes ENSORLG00000005870 I 0.840
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.755
Ebf4 Dipodomys ordii ENSDORG00000004139 N 0.745
EBF4 Echinops telfairi ENSETEG00000015956 I 0.736
Ebf4 Mus musculus ENSMUSG00000053552 D 0.755
EBF4 Oryzias latipes ENSORLG00000020414 I 0.849
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.755
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.745
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.792
EFV50386 Trichinella spiralis EFV50386 I 0.717
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I 0.821
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.792
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.821
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.755
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.783
ENSAMXG00000012646 Astyanax mexicanus ENSAMXG00000012646 I 0.821
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.792
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.792
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.708
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.877
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.792
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I 0.858
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.764
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.858
ENSMEUG00000001579 Macropus eugenii ENSMEUG00000001579 N 0.821
ENSMEUG00000009275 Macropus eugenii ENSMEUG00000009275 I 0.783
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I 0.821
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I 0.868
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.792
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I 0.821
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.792
ENSOANG00000005673 Ornithorhynchus anatinus ENSOANG00000005673 I 0.726
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.792
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.840
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.792
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.745
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.755
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.736
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.792
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.821
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.840
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.840
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.877
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.792
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.877
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.783
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I 0.783
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.792
ENSSSCG00000025415 Sus scrofa ENSSSCG00000025415 I 0.764
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I 0.792
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I 0.821
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.840
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.840
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.745
HelroG147258 Helobdella robusta HelroG147258 I 0.708
ISCW021819 Ixodes scapularis ISCW021819 I 0.726
LCUP013861 Lucilia cuprina LCUP013861 I 0.731
LotgiG225788 Lottia gigantea LotgiG225788 I 0.717
MESCA011260 Megaselia scalaris MESCA011260 I 0.733
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I 0.792
Ogr09591 Ophisaurus gracilis Ogr09591 I 0.783
Ogr13832 Ophisaurus gracilis Ogr13832 I 0.868
Sakowv30011013m.g Saccoglossus kowalevskii Sakowv30011013m.g I 0.726
SBAD_0000456201 Soboliphyme baturini SBAD_0000456201 I 0.726
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.708