Alligator_sinensis_CCG017609.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG017609.1 T174798_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		1.000 1.000
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		1.000 1.000
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.975 0.975
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.975 0.975
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.975 0.975
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.975 0.975
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.950 0.950
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.950 0.950
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017609.1 EBF1 1 40

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.000
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.000
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.000
Bo4g016000 Brassica oleracea Bo4g016000 I 0.000
Bo4g191530 Brassica oleracea Bo4g191530 I 0.000
Bo8g092560 Brassica oleracea Bo8g092560 I 0.000
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.000
Bra004693 Brassica rapa Bra004693 I 0.000
Bra016877 Brassica rapa Bra016877 I 0.000
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.000
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.000
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.000
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.000
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.000
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.000
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.000
Cla006088 Citrullus lanatus Cla006088 I 0.000
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.000
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.000
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.000
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.000
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.000
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.000
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.000
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.000
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.000
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.000
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.000
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.000
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.000
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.000
LBD16 Arabidopsis thaliana AT2G42430 D 0.000
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.000
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.000
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.000
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.000
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.000
MDP0000131964 Malus domestica MDP0000131964 I 0.000
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.000
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.000
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.000
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.000
OB02G44330 Oryza brachyantha OB02G44330 I 0.000
OB03G13880 Oryza brachyantha OB03G13880 I 0.000
OB03G13890 Oryza brachyantha OB03G13890 I 0.000
OBART03G03820 Oryza barthii OBART03G03820 I 0.000
OBART03G03830 Oryza barthii OBART03G03830 I 0.000
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.000
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.000
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.000
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.000
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.000
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.000
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.000
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.000
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.000
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.000
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.000
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.000
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.000
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.000
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.000
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.000
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.000
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.000
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.000
OS02G0820500 Oryza sativa OS02G0820500 I 0.000
OS03G0149000 Oryza sativa OS03G0149000 I 0.000
OS03G0149100 Oryza sativa OS03G0149100 I 0.000
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.000
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.000
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.000
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.000
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.000
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.000
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.000
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.000
Pm020629 Prunus mume Pm020629 I 0.000
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.000
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.000
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.000
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.000
Si019578m.g Setaria italica Si019578m.g I 0.000
Si037727m.g Setaria italica Si037727m.g I 0.000
Si040019m.g Setaria italica Si040019m.g I 0.000
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.000
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.000
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.000
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.000
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.000
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.000
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.000
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.000
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.000
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.000
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.000
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.000