Alligator_sinensis_CCG017610.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG017610.1 T174799_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.960 0.960
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.839 0.839
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.799 0.799
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.799 0.799
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.799 0.799
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.759 0.759
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.753 0.753
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017610.1 EBF1 16 189

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007097 Calypte anna Aan_R007097 I 0.822
ACOM041538 Anopheles coluzzii ACOM041538 I 0.721
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.971
AMEM016790 Anopheles merus AMEM016790 I 0.721
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.827
CapteG93575 Capitella teleta CapteG93575 I 0.724
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.839
D917_06660 Trichinella nativa D917_06660 I 0.701
D918_06798 Trichuris suis D918_06798 I 0.707
EBF1 Bos taurus ENSBTAG00000037508 I 0.799
EBF1 Canis familiaris ENSCAFG00000017318 I 0.799
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.799
EBF1 Cavia porcellus ENSCPOG00000026184 I 0.799
EBF1 Equus caballus ENSECAG00000007964 I 0.793
EBF1 Echinops telfairi ENSETEG00000011711 I 0.799
EBF1 Felis catus ENSFCAG00000008547 I 0.713
EBF1 Homo sapiens ENSG00000164330 D 0.799
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.799
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.799
EBF1 Microcebus murinus ENSMICG00000010036 I 0.701
EBF1 Monodelphis domestica ENSMODG00000008198 I 0.799
Ebf1 Mus musculus ENSMUSG00000057098 D 0.799
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I 0.799
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I 0.793
EBF1 Oryzias latipes ENSORLG00000002342 I 0.782
EBF1 Oryzias latipes ENSORLG00000007471 I 0.787
EBF1 Pan troglodytes ENSPTRG00000017477 I 0.799
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.799
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.753
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.782
ebf1a Danio rerio ENSDARG00000099849 I 0.782
ebf1b Danio rerio ENSDARG00000069196 I 0.787
EBF2 Bos taurus ENSBTAG00000040390 I 0.954
EBF2 Canis familiaris ENSCAFG00000008918 I 0.954
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.970
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.954
ebf2 Danio rerio ENSDARG00000042525 I 0.856
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.954
EBF2 Equus caballus ENSECAG00000014179 I 0.719
EBF2 Homo sapiens ENSG00000221818 D 0.954
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.902
EBF2 Gallus gallus ENSGALG00000000242 I 0.971
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.954
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.954
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.971
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.948
EBF2 Monodelphis domestica ENSMODG00000016702 I 0.856
Ebf2 Mus musculus ENSMUSG00000022053 D 0.960
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.954
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.954
ebf2 Oryzias latipes ENSORLG00000006408 I 0.902
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.954
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.943
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.954
EBF2 Sus scrofa ENSSSCG00000009655 I 0.954
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.971
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.897
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.902
EBF2 Vicugna pacos ENSVPAG00000015422 I 0.757
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.914
ebf2.L Xenopus laevis XB-GENE-6252857 I 0.908
ebf2.S Xenopus laevis XB-GENE-971141 I 0.897
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.833
EBF3 Cavia porcellus ENSCPOG00000005096 I 0.822
EBF3 Echinops telfairi ENSETEG00000014060 I 0.839
EBF3 Homo sapiens ENSG00000108001 D 0.839
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.839
Ebf3 Mus musculus ENSMUSG00000010476 I 0.839
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I 0.833
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.839
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.839
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.839
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.833
ebf3 Xenopus tropicalis XB-GENE-962543 I 0.833
ebf3a Danio rerio ENSDARG00000100244 I 0.822
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.810
ebf3a Oryzias latipes ENSORLG00000005870 I 0.805
ebf3b Danio rerio ENSDARG00000091287 I 0.730
EBF4 Bos taurus ENSBTAG00000037757 I 0.753
EBF4 Canis familiaris ENSCAFG00000006631 I 0.753
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I 0.736
EBF4 Homo sapiens ENSG00000088881 D 0.753
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.753
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.753
EBF4 Monodelphis domestica ENSMODG00000005256 I 0.764
Ebf4 Mus musculus ENSMUSG00000053552 D 0.759
EBF4 Otolemur garnettii ENSOGAG00000004688 I 0.753
EBF4 Oryzias latipes ENSORLG00000020414 I 0.810
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.759
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.799
EFV50386 Trichinella spiralis EFV50386 I 0.701
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I 0.753
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I 0.970
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.954
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.799
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.753
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.793
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I 0.828
ENSAMXG00000021198 Astyanax mexicanus ENSAMXG00000021198 I 0.865
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.971
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.839
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I 0.776
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.839
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.971
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I 0.799
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.787
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.810
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I 0.833
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.914
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I 0.811
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.828
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I 0.782
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I 0.914
ENSMEUG00000009275 Macropus eugenii ENSMEUG00000009275 I 0.810
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I 0.759
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I 0.828
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.954
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.753
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I 0.770
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.954
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.954
ENSOARG00000012916 Ovis aries ENSOARG00000012916 I 0.793
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.805
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I 0.799
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.787
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.787
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I 0.810
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.718
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.759
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.954
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.787
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.810
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I 0.902
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.805
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I 0.811
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I 0.805
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.822
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.753
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I 0.799
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.954
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.839
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.960
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I 0.755
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I 0.948
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.770
ENSSSCG00000025415 Sus scrofa ENSSSCG00000025415 I 0.776
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I 0.793
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I 0.741
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I 0.948
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I 0.782
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I 0.787
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.810
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I 0.753
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.805
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.891
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I 0.730
LCUP013861 Lucilia cuprina LCUP013861 I 0.720
LotgiG225788 Lottia gigantea LotgiG225788 I 0.736
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I 0.925
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I 0.719
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I 0.718
Ocbimv22038947m.g Octopus bimaculoides Ocbimv22038947m.g N 0.701
Ogr09591 Ophisaurus gracilis Ogr09591 I 0.914
Ogr13832 Ophisaurus gracilis Ogr13832 I 0.845
Pvit_04283 Pogona vitticeps Pvit_04283 I 0.920
Pvit_16838 Pogona vitticeps Pvit_16838 I 0.776
SBAD_0000456201 Soboliphyme baturini SBAD_0000456201 I 0.708
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I 0.782
SMAR000842 Strigamia maritima SMAR000842 I 0.741
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I 0.713