Sakowv30011013m.g (Saccoglossus kowalevskii)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Sakowv30011013m.g T174846_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.789 0.789
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.783 0.783
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.783 0.783
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.783 0.783
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.759 0.759
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.759 0.759
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.729 0.729
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23947976_peptide EBF1 14 179
23947977_peptide EBF1 14 179

Links

Other EBF1 family TFs
Other Saccoglossus kowalevskii TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA002866 Anopheles arabiensis AARA002866 I 0.774
ACHR005921 Anopheles christyi ACHR005921 I 0.769
ACOM041538 Anopheles coluzzii ACOM041538 I 0.770
ACYPI060841 Acyrthosiphon pisum ACYPI060841 I 0.820
ACYPI50903 Acyrthosiphon pisum ACYPI50903 I 0.708
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.729
AFUN004907 Anopheles funestus AFUN004907 I 0.791
Alligator_sinensis_CCG000599.1 Alligator sinensis Alligator_sinensis_CCG000599.1 I 0.726
AMEC010301 Anopheles melas AMEC010301 I 0.711
AMEM016790 Anopheles merus AMEM016790 I 0.770
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.865
ASTEI11507 Anopheles stephensi ASTEI11507 I 0.747
D918_06798 Trichuris suis D918_06798 I 0.738
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.783
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.747
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.769
EBF1 Equus caballus ENSECAG00000007964 I 0.769
ebf1b Danio rerio ENSDARG00000069196 I 0.783
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.717
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.729
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.729
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.729
EBF2 Gallus gallus ENSGALG00000000242 I 0.729
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.705
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.707
EBF3 Echinops telfairi ENSETEG00000014060 I 0.783
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.789
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.771
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.783
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.723
EBF4 Echinops telfairi ENSETEG00000015956 I 0.701
Ebf4 Mus musculus ENSMUSG00000053552 D 0.759
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I 0.794
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I 0.714
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.795
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.729
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.723
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.735
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I 0.764
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.729
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I 0.771
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.723
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I 0.769
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I 0.777
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I 0.783
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I 0.746
ENSOARG00000012916 Ovis aries ENSOARG00000012916 I 0.769
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.735
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.783
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I 0.787
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I 0.762
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I 0.755
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I 0.723
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.789
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I 0.769
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I 0.729
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I 0.789
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.783
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.705
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I 0.760
GF11778 Drosophila ananassae FBgn0088818 I 0.705
GH25280 Drosophila grimshawi FBgn0132735 I 0.722
HelroG112029 Helobdella robusta HelroG112029 I 0.753
HelroG147258 Helobdella robusta HelroG147258 I 0.798
Hsal_03265--XP_394171.3_APIME Harpegnathos saltator Hsal_03265--XP_394171.3_APIME I 0.728
ISCW021819 Ixodes scapularis ISCW021819 I 0.745
LCUP013861 Lucilia cuprina LCUP013861 I 0.763
LotgiG225788 Lottia gigantea LotgiG225788 I 0.765
MCINX016127 Melitaea cinxia MCINX016127 I 0.711
MDOA011385 Musca domestica MDOA011385 I 0.747
MESCA011260 Megaselia scalaris MESCA011260 I 0.747
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I 0.729
Myotis_brandtii_EBF3_10024821 Myotis brandtii Myotis_brandtii_EBF3_10024821 I 0.724
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I 0.719
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.705
Ogr09591 Ophisaurus gracilis Ogr09591 I 0.723
Ogr13832 Ophisaurus gracilis Ogr13832 I 0.710
Pvit_04283 Pogona vitticeps Pvit_04283 I 0.741
RPRC005513 Rhodnius prolixus RPRC005513 I 0.804
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I 0.769
SINV26263 Solenopsis invicta SINV26263 I 0.938
SMAR000842 Strigamia maritima SMAR000842 I 0.802
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.789
TRE_0001373801 Trichobilharzia regenti TRE_0001373801 I 0.717