fgenesh2_pm.scaffold_42000007 (Branchiostoma floridae)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 fgenesh2_pm.scaffold_42000007 T189342_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxa2
M00162_2.00 		Mus musculus
GTAAAYAW
WTRTTTAC		 PBM
Badis et al.(2009)
Foxa2_2830 		0.819 0.860
FOXA2
M04815_2.00 		Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX 		0.819 0.860
Foxa2
M08121_2.00 		Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA		 ChIP-seq
Mathelier et al.(2014)
MA0047.2 		0.819 0.860
FOXA2
M07959_2.00 		Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha 		0.819 0.860
FOXA2
M09088_2.00 		Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN		 Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A 		0.819 0.860
Foxa2
M09104_2.00 		Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV		 Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A 		0.819 0.860
FOXA2
M09542_2.00 		Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW		 Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694 		0.819 0.860
FOXA2
M10540_2.00 		Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW		 Transfac
Matys et al.(2006)
V$HNF3B_01 		0.819 0.860
FOXA2
M10541_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3B_Q6 		0.819 0.860
AAA20679
M10575_2.00 		Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW		 Transfac
Matys et al.(2006)
V$XFD3_01 		0.819 0.860
FOXA2
M04816_2.00 		Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX 		0.819 0.860
fkh
M03734_2.00 		Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW		 SELEX
Nitta et al.(2015)
fkh_1 		0.777 0.849
fkh
M03735_2.00 		Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD		 SELEX
Nitta et al.(2015)
fkh_2 		0.777 0.849
fkh
M06473_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Mathelier et al.(2014)
MA0446.1 		0.777 0.849
fkh
M06194_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659 		0.777 0.849
fkh
M08200_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 ChIP-seq
Contrino et al.(2012)
Mf15 		0.777 0.849
fkh
M09668_2.00 		Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA		 Misc
Kulakovskiy et al.(2009)
fkh 		0.777 0.849
FOXA1
M04817_2.00 		Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX 		0.761 0.860
FOXA1
M04819_2.00 		Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1 		0.761 0.860
FOXA1
M04820_2.00 		Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2 		0.761 0.860
FOXA1
M08117_2.00 		Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN		 ChIP-seq
Mathelier et al.(2014)
MA0148.3 		0.761 0.860
FOXA1
M07960_2.00 		Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha 		0.761 0.860
FOXA1
M07961_2.00 		Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha 		0.761 0.860
FOXA1
M07962_2.00 		Homo sapiens
NWVWGTAAACA
TGTTTACWBWN		 ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha 		0.761 0.860
FOXA1
M08199_2.00 		Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV		 ChIP-seq
Contrino et al.(2012)
Mv69 		0.761 0.860
FOXA1
M08028_2.00 		Homo sapiens
WRWRYAAAYA
TRTTTRYWYW		 ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1 		0.761 0.860
FOXA1
M09090_2.00 		Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB		 Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A 		0.761 0.860
Foxa1
M09103_2.00 		Mus musculus
TRTTKACWYW
WRWGTMAAYA		 Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A 		0.761 0.860
FOXA1
M09544_2.00 		Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2 		0.761 0.860
FOXA1
M09543_2.00 		Homo sapiens
WRWGTAAACA
TGTTTACWYW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1 		0.761 0.860
FOXA1
M09545_2.00 		Homo sapiens
WRWGTAAAYA
TRTTTACWYW		 Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831 		0.761 0.860
FOXA1
M10542_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_02 		0.761 0.860
FOXA1
M10543_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_03 		0.761 0.860
FOXA1
M10544_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_01 		0.761 0.860
FOXA1
M10545_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6 		0.761 0.860
FOXA1
M10546_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_Q6 		0.761 0.860
FOXA1
M04818_2.00 		Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX 		0.761 0.860
FOXA1
M04821_2.00 		Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1 		0.761 0.860
FOXA1
M04822_2.00 		Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2 		0.761 0.860
FOXA3
M04831_2.00 		Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1 		0.752 0.837
FOXA3
M04832_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2 		0.752 0.837
FOXA3
M09096_2.00 		Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B 		0.752 0.837
Foxa3
M09106_2.00 		Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A 		0.752 0.837
FOXA3
M10557_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3G_Q4 		0.752 0.837
FOXA3
M04833_2.00 		Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1 		0.752 0.837
FOXA3
M04834_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2 		0.752 0.837
Q2L6N7_PELSI
M01990_2.00 		Trionyx sinensis
KTRTTTACA
TGTAAAYAM		 PBM
Weirauch et al.(2014)
pTH5334 		0.748 0.802
pha-4
M08123_2.00 		Caenorhabditis elegans
WRWGYAAAYA
TRTTTRCWYW		 ChIP-seq
Mathelier et al.(2014)
MA0546.1 		0.691 0.779
pha-4
M08201_2.00 		Caenorhabditis elegans
GTAAACAR
YTGTTTAC		 ChIP-seq
Contrino et al.(2012)
Mw164 		0.691 0.779
pha-4
M09548_2.00 		Caenorhabditis elegans
RYAMAYAN
NTRTKTRY		 Misc
Heinz et al.(2010)
cElegans-Embryos-PHA4_modEncode 		0.691 0.779
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_42000007 Forkhead 93 182

Links

Other Forkhead family TFs
Other Branchiostoma floridae TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01341 Capronia coronata A1O1_01341 N
A1O3_08861 Capronia epimyces A1O3_08861 N
A1O5_12280 Cladophialophora psammophila A1O5_12280 N
A1O9_00929 Exophiala aquamarina A1O9_00929 N
ACLA_046870 Aspergillus clavatus CADACLAG00004684 N
AFUA_4G07560 Aspergillus fumigatus CADAFUAG00008022 N
ANIA_04472 Aspergillus nidulans CADANIAG00005974 N
ATEG_05447 Aspergillus terreus CADATEAG00003680 N
BBA_02247 Beauveria bassiana BBA_02247 N
BGHDH14_bgh06615 Blumeria graminis BGHDH14_bgh06615 N
CADAFLAG00004963 Aspergillus flavus CADAFLAG00004963 N
CADANGAG00003904 Aspergillus niger CADANGAG00003904 N
CADAORAG00007908 Aspergillus oryzae CADAORAG00007908 N
CFIO01_10218 Colletotrichum fioriniae CFIO01_10218 N
CGGC5_504 Colletotrichum gloeosporioides CGGC5_504 N
CH063_07253 Colletotrichum higginsianum CH063_07253 N
CIMG_09550 Coccidioides immitis CIMG_09550 N
Cob_10011 Colletotrichum orbiculare Cob_10011 N
CPC735_018970 Coccidioides posadasii CPC735_018970 N
CPUR_05002 Claviceps purpurea CPUR_05002 N
CSUB01_06218 Colletotrichum sublineola CSUB01_06218 N
EPUS_00195 Endocarpon pusillum EPUS_00195 N
EURHEDRAFT_412596 Aspergillus ruber EURHEDRAFT_412596 N
EV44_g2608 Erysiphe necator EV44_g2608 N
e_gw1.00609.14.1 Aspergillus carbonarius e_gw1.00609.14.1 N
FFUJ_08647 Fusarium fujikuroi FFUJ_08647 N
fgenesh1_pm.sca_10_chr8_2_0000183 Nectria haematococca fgenesh1_pm.sca_10_chr8_2_0000183 N
FGRRES_05512 Fusarium graminearum FGRRES_05512 N
FPSE_05177 Fusarium pseudograminearum FPSE_05177 N
FVEG_07013 Fusarium verticillioides FVEG_07013 N
G647_10033 Cladophialophora carrionii G647_10033 N
GGTG_08239 Gaeumannomyces graminis GGTG_08239 N
GLRG_00137 Colletotrichum graminicola GLRG_00137 N
GMDG_05133 Pseudogymnoascus destructans GMDG_05133 N
HMPREF1120_00355 Exophiala dermatitidis HMPREF1120_00355 N
HMPREF1541_06366 Cyphellophora europaea HMPREF1541_06366 N
M7I_2968 Glarea lozoyensis M7I_2968 N
MAC_02538 Metarhizium acridum MAC_02538 N
MAM_01486 Metarhizium album MAM_01486 N
MANI_110882 Metarhizium anisopliae MANI_110882 N
MAPG_08031 Magnaporthe poae MAPG_08031 N
MBR_07690 Metarhizium brunneum MBR_07690 N
MGU_03961 Metarhizium guizhouense MGU_03961 N
NechaG95544 Fusarium solani NechaG95544 N
NFIA_108640 Neosartorya fischeri CADNFIAG00010194 N
OCS_05069 Ophiocordyceps sinensis OCS_05069 N
OIDMADRAFT_143331 Oidiodendron maius OIDMADRAFT_143331 N
Pc22g18960 Penicillium chrysogenum Pc22g18960 N
PCH_Pc22g18960 Penicillium rubens PCH_Pc22g18960 N
PDE_03679 Penicillium oxalicum PDE_03679 N
PDIP_12360 Penicillium digitatum PDIP_12360 N
PEX1_089410 Penicillium expansum PEX1_089410 N
PFICI_11537 Pestalotiopsis fici PFICI_11537 N
PITC_006180 Penicillium italicum PITC_006180 N
PMAA_094090 Penicillium marneffei PMAA_094090 N
PMAA_094090 Talaromyces marneffei PMAA_094090 N
PV04_00132 Capronia semiimmersa PV04_00132 N
PV05_09469 Exophiala xenobiotica PV05_09469 N
PV06_05828 Exophiala oligosperma PV06_05828 N
PV07_09526 Cladophialophora immunda PV07_09526 N
PV08_09594 Exophiala spinifera PV08_09594 N
PV10_02096 Exophiala mesophila PV10_02096 N
PV11_09323 Exophiala sideris PV11_09323 N
PVAR5_5058 Byssochlamys spectabilis PVAR5_5058 N
S40285_00177 Stachybotrys chlorohalonata S40285_00177 N
S40288_02857 Stachybotrys chartarum S40288_02857 N
SBOR_5966 Sclerotinia borealis SBOR_5966 N
TRIATDRAFT_283367 Trichoderma atroviride TRIATDRAFT_283367 N
TRIVIDRAFT_43538 Trichoderma virens TRIVIDRAFT_43538 N
TSTA_047120 Talaromyces stipitatus TSTA_047120 N
U727_00430090181 Penicillium solitum U727_00430090181 N
UV8b_1287 Ustilaginoidea virens UV8b_1287 N
V499_07367 Pseudogymnoascus pannorum V499_07367 N
VDAG_05926 Verticillium dahliae VDAG_05926 N
VDBG_06863 Verticillium alfalfae VDBG_06863 N
VDBG_06863 Verticillium albo atrum VDBG_06863 N
VHEMI08803 Torrubiella hemipterigena VHEMI08803 N
X797_003194 Metarhizium robertsii X797_003194 N
Z517_02112 Fonsecaea pedrosoi Z517_02112 N
Z518_04555 Rhinocladiella mackenziei Z518_04555 N
Z519_04474 Cladophialophora bantiana Z519_04474 N