Bra014292 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra014292 T191957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.855 0.914
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.855 0.914
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.850 0.829
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.845 0.857
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.809 0.771
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014292.1-P GATA 224 260

Links

Other GATA family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29838.m001724 Ricinus communis 29838.m001724 I 0.836
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.850
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.831
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.836
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.850
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.850
Bo1g039000 Brassica oleracea Bo1g039000 I 0.809
Bo1g108240 Brassica oleracea Bo1g108240 I 0.856
Bo3g181450 Brassica oleracea Bo3g181450 I 0.865
Bo5g103560 Brassica oleracea Bo5g103560 I 0.856
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.865
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.809
Bra013805 Brassica rapa Bra013805 I 0.809
Bra023900 Brassica rapa Bra023900 I 0.856
Bra031258 Brassica rapa Bra031258 I 0.856
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.850
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.817
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.856
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.809
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.861
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.809
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.861
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.856
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.831
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.831
Ca_01471 Cicer arietinum Ca_01471 I 0.805
Ca_17522 Cicer arietinum Ca_17522 I 0.861
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.861
Cla013127 Citrullus lanatus Cla013127 I 0.831
Cla015736 Citrullus lanatus Cla015736 I 0.850
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.831
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.850
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.861
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.861
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.855
F775_08559 Aegilops tauschii F775_08559 I 0.836
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.855
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.855
GATA17 Oryza sativa OS02G0148500 I 0.850
GATA24 Arabidopsis thaliana AT3G21175 D 0.845
GATA28 Arabidopsis thaliana AT1G51600 D 0.855
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.861
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.836
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.845
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.850
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.836
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.836
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.850
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.836
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.861
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.855
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.830
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.850
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.850
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.836
mgf016112m Mimulus guttatus mgf016112m I 0.831
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.856
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.836
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.809
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.830
OB02G13220 Oryza brachyantha OB02G13220 I 0.850
OB06G33840 Oryza brachyantha OB06G33840 I 0.850
OBART02G03780 Oryza barthii OBART02G03780 I 0.850
OBART06G26250 Oryza barthii OBART06G26250 I 0.850
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.850
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.850
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.850
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.850
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.850
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.850
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.850
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.850
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.850
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.861
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.850
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.850
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.850
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.850
OS06G0698900 Oryza sativa OS06G0698900 D 0.850
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.845
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.845
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.850
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.845
Pm013048 Prunus mume Pm013048 I 0.850
Pm022163 Prunus mume Pm022163 I 0.836
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.836
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.861
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.832
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.836
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.850
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.861
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.836
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.845
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.850
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.850
Si006750m.g Setaria italica Si006750m.g I 0.845
TCM_007360 Theobroma cacao TCM_007360 I 0.836
TCM_027858 Theobroma cacao TCM_027858 I 0.861
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.865
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.861
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.809
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.809
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.836
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.836
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.836
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.856
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.856
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.856
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.836
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.861
ZIM Arabidopsis thaliana AT4G24470 D 0.809
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.850
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.855