CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PRUPE_ppa007038mg *(Prunus persica)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	PRUPE_ppa007038mg	T194918_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.867	1.000
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.867	1.000
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.867	1.000
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.862	0.972
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.847	0.889
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.847	0.889
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.843	0.833
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.843	0.833
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.838	0.806
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.832	0.833
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.832	0.833
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.832	0.833
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.832	0.778
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.832	0.778
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.823	0.806
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.823	0.806
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.823	0.806
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.819	0.750
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EMJ24292	GATA	267	302	CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLV

Links
Other GATA family TFs
Other *Prunus persica* TFs

614 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29908.m006255	Ricinus communis	29908.m006255	N	0.000
BGIOSGA028855	Oryza indica	BGIOSGA028855	N	0.000
BGIOSGA030928	Oryza indica	BGIOSGA030928	N	0.000
BRADI3G38360	Brachypodium distachyon	BRADI3G38360	N	0.000
BRADI4G32470	Brachypodium distachyon	BRADI4G32470	N	0.000
F775_02130	Aegilops tauschii	F775_02130	N	0.000
GRMZM2G082630	Zea mays	GRMZM2G082630	N	0.000
GRMZM2G113257	Zea mays	GRMZM2G113257	N	0.000
GRMZM2G145146	Zea mays	GRMZM2G145146	N	0.000
GSMUA_Achr3G06780_001	Musa acuminata	GSMUA_Achr3G06780_001	N	0.000
GSMUA_Achr9G15140_001	Musa acuminata	GSMUA_Achr9G15140_001	N	0.000
LPERR08G15030	Leersia perrieri	LPERR08G15030	N	0.000
MLOC_2366	Hordeum vulgare	MLOC_2366	N	0.000
MLOC_70640	Hordeum vulgare	MLOC_70640	N	0.000
OB08G25230	Oryza brachyantha	OB08G25230	N	0.000
OGLUM08G19000	Oryza glumaepatula	OGLUM08G19000	N	0.000
OMERI06G24090	Oryza meridionalis	OMERI06G24090	I	0.000
OMERI09G10230	Oryza meridionalis	OMERI09G10230	N	0.000
ONIVA08G20180	Oryza nivara	ONIVA08G20180	N	0.000
OPUNC08G16020	Oryza punctata	OPUNC08G16020	N	0.000
OPUNC09G11520	Oryza punctata	OPUNC09G11520	I	0.000
ORGLA08G0157100	Oryza glaberrima	ORGLA08G0157100	N	0.000
ORUFI08G20260	Oryza rufipogon	ORUFI08G20260	N	0.000
OS08G0477900	Oryza sativa	OS08G0477900	N	0.000
Pavir.Ba01985	Panicum virgatum	Pavir.Ba01985	N	0.000
Pavir.Fa00651	Panicum virgatum	Pavir.Fa00651	N	0.000
Pavir.J16121	Panicum virgatum	Pavir.J16121	N	0.000
Pavir.J25149	Panicum virgatum	Pavir.J25149	N	0.000
PGSC0003DMG400010208	Solanum tuberosum	PGSC0003DMG400010208	I	0.000
Sb02g026920	Sorghum bicolor	Sb02g026920	N	0.000
Sb07g023280	Sorghum bicolor	Sb07g023280	N	0.000
Si014356m.g	Setaria italica	Si014356m.g	N	0.000
Si033077m.g	Setaria italica	Si033077m.g	N	0.000
Solyc02g076920.2	Solanum lycopersicum	Solyc02g076920.2	I	0.000
Traes_2AL_7A37B5232	Triticum aestivum	Traes_2AL_7A37B5232	N	0.000
Traes_2BL_649181D92	Triticum aestivum	Traes_2BL_649181D92	N	0.000
Traes_2DL_5F0BD9D6F	Triticum aestivum	Traes_2DL_5F0BD9D6F	N	0.000
TRIUR3_09991	Triticum urartu	TRIUR3_09991	N	0.000

PRUPE_ppa007038mg (Prunus persica) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

614 Related TFs

PRUPE_ppa007038mg **(Prunus persica)
GATA**