CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.109180 *(Cucumis sativus)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Cucsa.109180	T196047_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.847	0.806
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.847	0.806
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.847	0.806
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.847	0.806
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.847	0.806
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.847	0.806
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.842	0.861
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.842	0.861
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.837	0.833
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.833	0.778
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.832	0.806
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.832	0.778
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.832	0.778
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.832	0.778
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.828	0.861
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.819	0.722
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.819	0.722
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.819	0.722
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.109180.1	GATA	253	288	CSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGRLF
Cucsa.109180.2	GATA	253	288	CSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGRLF
Cucsa.109180.3	GATA	253	288	CSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGRLF

Links
Other GATA family TFs
Other *Cucumis sativus* TFs

613 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA001527	Oryza indica	BGIOSGA001527	N	0.000
BGIOSGA001528	Oryza indica	BGIOSGA001528	N	0.000
BGIOSGA026486	Oryza indica	BGIOSGA026486	N	0.000
BRADI3G43000	Brachypodium distachyon	BRADI3G43000	N	0.000
Ca_19047	Cicer arietinum	Ca_19047	N	0.000
evm.TU.supercontig_5.128	Carica papaya	evm.TU.supercontig_5.128	N	0.000
F775_22386	Aegilops tauschii	F775_22386	N	0.000
F775_30314	Aegilops tauschii	F775_30314	N	0.000
GRMZM2G006585	Zea mays	GRMZM2G006585	N	0.000
GRMZM2G171934	Zea mays	GRMZM2G171934	N	0.000
GSMUA_Achr7G04460_001	Musa acuminata	GSMUA_Achr7G04460_001	N	0.000
GSMUA_AchrUn_randomG07560_001	Musa acuminata	GSMUA_AchrUn_randomG07560_001	N	0.000
LPERR01G15600	Leersia perrieri	LPERR01G15600	N	0.000
LPERR08G20370	Leersia perrieri	LPERR08G20370	N	0.000
MLOC_23439	Hordeum vulgare	MLOC_23439	N	0.000
MLOC_26846	Hordeum vulgare	MLOC_26846	N	0.000
OB01G27340	Oryza brachyantha	OB01G27340	N	0.000
OB08G30470	Oryza brachyantha	OB08G30470	N	0.000
OBART01G17820	Oryza barthii	OBART01G17820	N	0.000
OBART01G17850	Oryza barthii	OBART01G17850	N	0.000
OBART08G23610	Oryza barthii	OBART08G23610	N	0.000
OGLUM01G21080	Oryza glumaepatula	OGLUM01G21080	N	0.000
OGLUM01G21100	Oryza glumaepatula	OGLUM01G21100	N	0.000
OGLUM08G25080	Oryza glumaepatula	OGLUM08G25080	N	0.000
OLONG_020563	Oryza longistaminata	OLONG_020563	N	0.000
OMERI01G16650	Oryza meridionalis	OMERI01G16650	N	0.000
OMERI01G16670	Oryza meridionalis	OMERI01G16670	N	0.000
OMERI08G18450	Oryza meridionalis	OMERI08G18450	N	0.000
ONIVA08G26670	Oryza nivara	ONIVA08G26670	N	0.000
OPUNC01G18340	Oryza punctata	OPUNC01G18340	N	0.000
OPUNC01G18360	Oryza punctata	OPUNC01G18360	N	0.000
OPUNC08G21610	Oryza punctata	OPUNC08G21610	N	0.000
ORGLA01G0145800	Oryza glaberrima	ORGLA01G0145800	N	0.000
ORGLA08G0190300	Oryza glaberrima	ORGLA08G0190300	N	0.000
ORGLA11G0065100	Oryza glaberrima	ORGLA11G0065100	N	0.000
ORGLA11G0204800	Oryza glaberrima	ORGLA11G0204800	N	0.000
ORUFI08G26100	Oryza rufipogon	ORUFI08G26100	N	0.000
OS01G0517800	Oryza sativa	OS01G0517800	N	0.000
OS01G0518000	Oryza sativa	OS01G0518000	N	0.000
OS08G0560300	Oryza sativa	OS08G0560300	N	0.000
Pavir.Ea01651	Panicum virgatum	Pavir.Ea01651	N	0.000
Pavir.Eb01352	Panicum virgatum	Pavir.Eb01352	N	0.000
Pavir.Eb02108	Panicum virgatum	Pavir.Eb02108	N	0.000
Pavir.Fa00017	Panicum virgatum	Pavir.Fa00017	N	0.000
Pavir.Fb02226	Panicum virgatum	Pavir.Fb02226	N	0.000
Pavir.J13246	Panicum virgatum	Pavir.J13246	N	0.000
POPTR_0001s21990	Populus trichocarpa	POPTR_0001s21990	N	0.000
POPTR_0009s00830	Populus trichocarpa	POPTR_0009s00830	N	0.000
Sb07g024020	Sorghum bicolor	Sb07g024020	N	0.000
Sb08g005380	Sorghum bicolor	Sb08g005380	N	0.000
Si004634m.g	Setaria italica	Si004634m.g	N	0.000
Si004809m.g	Setaria italica	Si004809m.g	N	0.000
TRAES3BF035900070CFD_g	Triticum aestivum	TRAES3BF035900070CFD_g	N	0.000
TRAES3BF035900140CFD_g	Triticum aestivum	TRAES3BF035900140CFD_g	N	0.000
TRAES3BF035900190CFD_g	Triticum aestivum	TRAES3BF035900190CFD_g	N	0.000
Traes_3AL_970EF6E45	Triticum aestivum	Traes_3AL_970EF6E45	N	0.000
Traes_3DL_6A5CA5C37	Triticum aestivum	Traes_3DL_6A5CA5C37	N	0.000
Traes_3DL_96F825D26	Triticum aestivum	Traes_3DL_96F825D26	N	0.000
Traes_7AS_9EA289C71	Triticum aestivum	Traes_7AS_9EA289C71	N	0.000
Traes_7DS_620E0D488	Triticum aestivum	Traes_7DS_620E0D488	N	0.000
TRIUR3_09966	Triticum urartu	TRIUR3_09966	N	0.000
TRIUR3_27842	Triticum urartu	TRIUR3_27842	N	0.000
TRIUR3_34039	Triticum urartu	TRIUR3_34039	N	0.000

Cucsa.109180 (Cucumis sativus) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

613 Related TFs

Cucsa.109180 **(Cucumis sativus)
GATA**