Cagra.4093s0018 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.4093s0018 T196437_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.867 1.000
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.862 0.972
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.862 0.972
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.862 0.972
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.851 0.917
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.851 0.917
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.838 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.837 0.861
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.837 0.861
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.837 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.823 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4093s0018.1.p GATA 205 240

Links

Other GATA family TFs
Other Capsella grandiflora TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R012751 Aptenodytes forsteri Afo_R012751 I 0.000
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I 0.000
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I 0.000
ENSBTAG00000033445 Bos taurus ENSBTAG00000033445 I 0.000
ENSBTAG00000033874 Bos taurus ENSBTAG00000033874 N 0.000
ENSBTAG00000034444 Bos taurus ENSBTAG00000034444 N 0.000
ENSBTAG00000036343 Bos taurus ENSBTAG00000036343 I 0.000
ENSBTAG00000046035 Bos taurus ENSBTAG00000046035 N 0.000
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I 0.000
ENSBTAG00000047120 Bos taurus ENSBTAG00000047120 I 0.000
ENSBTAP00000044770-D1 Bos grunniens ENSBTAP00000044770-D1 I 0.000
ENSBTAP00000045775-D1 Bos grunniens ENSBTAP00000045775-D1 N 0.000
ENSBTAP00000047496-D1 Bos grunniens ENSBTAP00000047496-D1 I 0.000
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I 0.000
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I 0.000
ENSCJAG00000032803 Callithrix jacchus ENSCJAG00000032803 I 0.000
ENSCPOG00000021607 Cavia porcellus ENSCPOG00000021607 I 0.000
ENSCPOG00000027550 Cavia porcellus ENSCPOG00000027550 I 0.000
ENSDNOG00000015218 Dasypus novemcinctus ENSDNOG00000015218 I 0.000
ENSDNOG00000031164 Dasypus novemcinctus ENSDNOG00000031164 I 0.000
ENSDNOG00000043873 Dasypus novemcinctus ENSDNOG00000043873 I 0.000
ENSDNOG00000045058 Dasypus novemcinctus ENSDNOG00000045058 I 0.000
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I 0.000
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I 0.000
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I 0.000
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I 0.000
ENSGALG00000019262 Gallus gallus ENSGALG00000019262 I 0.000
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I 0.000
ENSLAFG00000016976 Loxodonta africana ENSLAFG00000016976 I 0.000
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I 0.000
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I 0.000
ENSMGAG00000013753 Meleagris gallopavo ENSMGAG00000013753 I 0.000
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I 0.000
ENSMLUG00000022730 Myotis lucifugus ENSMLUG00000022730 I 0.000
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I 0.000
ENSMLUG00000026997 Myotis lucifugus ENSMLUG00000026997 N 0.000
ENSMLUG00000028032 Myotis lucifugus ENSMLUG00000028032 I 0.000
ENSMLUG00000030480 Myotis lucifugus ENSMLUG00000030480 I 0.000
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I 0.000
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I 0.000
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I 0.000
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I 0.000
ENSOARG00000001582 Ovis aries ENSOARG00000001582 N 0.000
ENSOARG00000002777 Ovis aries ENSOARG00000002777 N 0.000
ENSOARG00000002879 Ovis aries ENSOARG00000002879 I 0.000
ENSOARG00000003920 Ovis aries ENSOARG00000003920 I 0.000
ENSOARG00000003931 Ovis aries ENSOARG00000003931 N 0.000
ENSOARG00000009065 Ovis aries ENSOARG00000009065 N 0.000
ENSOARG00000009275 Ovis aries ENSOARG00000009275 N 0.000
ENSOCUG00000025707 Oryctolagus cuniculus ENSOCUG00000025707 I 0.000
ENSOGAG00000026441 Otolemur garnettii ENSOGAG00000026441 I 0.000
ENSSSCG00000012732 Sus scrofa ENSSSCG00000012732 I 0.000
ENSSTOG00000025684 Ictidomys tridecemlineatus ENSSTOG00000025684 I 0.000
ENSTGUG00000006065 Taeniopygia guttata ENSTGUG00000006065 I 0.000
ENSTGUG00000006066 Taeniopygia guttata ENSTGUG00000006066 I 0.000
ENSTRUG00000010837 Takifugu rubripes ENSTRUG00000010837 I 0.000
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I 0.000
ENSVPAG00000004671 Vicugna pacos ENSVPAG00000004671 I 0.000
Gfo_R015012 Geospiza fortis Gfo_R015012 I 0.000
HSFY1 Homo sapiens ENSG00000172468 D 0.000
Hsfy2 Mus musculus ENSMUSG00000045336 I 0.000
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I 0.000
HSFY2 Homo sapiens ENSG00000169953 D 0.000
K437DRAFT_217062 Tilletiaria anomala K437DRAFT_217062 I 0.000
Myotis_brandtii_HSFY1_10020625 Myotis brandtii Myotis_brandtii_HSFY1_10020625 I 0.000
Pvit_14501 Pogona vitticeps Pvit_14501 I 0.000
Tal_R003042 Tyto alba Tal_R003042 I 0.000
yakG016733 Bos grunniens yakG016733 N 0.000