Carubv10017765m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10017765m.g T196464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017765m GATA 150 185

Links

Other GATA family TFs
Other Capsella rubella TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I
BGIOSGA020731 Oryza indica BGIOSGA020731 N
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
GRMZM2G065451 Zea mays GRMZM2G065451 N
GRMZM2G097275 Zea mays GRMZM2G097275 N
GRMZM2G126827 Zea mays GRMZM2G126827 N
GRMZM2G156621 Zea mays GRMZM2G156621 N
GRMZM2G163813 Zea mays GRMZM2G163813 N
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
LPERR02G02980 Leersia perrieri LPERR02G02980 N
LPERR06G19770 Leersia perrieri LPERR06G19770 N
mgf010397m Mimulus guttatus mgf010397m N
mgf019346m Mimulus guttatus mgf019346m I
MLOC_62426 Hordeum vulgare MLOC_62426 N
OB02G12930 Oryza brachyantha OB02G12930 N
OB06G31550 Oryza brachyantha OB06G31550 N
OBART02G03260 Oryza barthii OBART02G03260 N
OBART06G23820 Oryza barthii OBART06G23820 N
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N
OLONG_025693 Oryza longistaminata OLONG_025693 N
OMERI02G03900 Oryza meridionalis OMERI02G03900 N
OMERI06G23750 Oryza meridionalis OMERI06G23750 N
ONIVA02G03070 Oryza nivara ONIVA02G03070 N
ONIVA06G27990 Oryza nivara ONIVA06G27990 N
OPUNC02G02570 Oryza punctata OPUNC02G02570 N
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N
OS02G0139400 Oryza sativa OS02G0139400 N
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N
Pavir.J20730 Panicum virgatum Pavir.J20730 N
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
Sb04g003175 Sorghum bicolor Sb04g003175 N
Sb04g004940 Sorghum bicolor Sb04g004940 N
Si017749m.g Setaria italica Si017749m.g N
SPL11 Oryza sativa OS06G0663500 N
SPL3 Oryza indica BGIOSGA007499 N
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I