Carubv10023774m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10023774m.g T196468_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.856 0.889
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.856 0.889
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.837 0.806
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.722
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.694
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.722
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.722
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.722
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.722
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.722
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.722
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.722
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.722
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.694
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.694
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.694
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.667
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.667
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023774m GATA 212 247

Links

Other GATA family TFs
Other Capsella rubella TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_10088 Cladophialophora psammophila A1O5_10088 N 0.000
BBA_07259 Beauveria bassiana BBA_07259 N 0.000
Bcin10g04400 Botrytis cinerea Bcin10g04400 N 0.000
CFIO01_13194 Colletotrichum fioriniae CFIO01_13194 N 0.000
CGGC5_975 Colletotrichum gloeosporioides CGGC5_975 N 0.000
CH063_12954 Colletotrichum higginsianum CH063_12954 N 0.000
Cob_01758 Colletotrichum orbiculare Cob_01758 N 0.000
CSUB01_05390 Colletotrichum sublineola CSUB01_05390 N 0.000
e_gw1.14.618.1 Nectria haematococca e_gw1.14.618.1 N 0.000
FFUJ_12231 Fusarium fujikuroi FFUJ_12231 N 0.000
FGRRES_01915 Fusarium graminearum FGRRES_01915 N 0.000
FOXG_04220 Fusarium oxysporum FOXG_04220 N 0.000
FOXG_14431 Fusarium oxysporum FOXG_14431 N 0.000
FOXG_15050 Fusarium oxysporum FOXG_15050 N 0.000
FPSE_09133 Fusarium pseudograminearum FPSE_09133 N 0.000
FVEG_07339 Fusarium verticillioides FVEG_07339 N 0.000
GLRG_01306 Colletotrichum graminicola GLRG_01306 N 0.000
GMDG_02112 Pseudogymnoascus destructans GMDG_02112 N 0.000
GSTUM_00009849001 Tuber melanosporum GSTUM_00009849001 N 0.000
HMPREF1120_08485 Exophiala dermatitidis HMPREF1120_08485 N 0.000
MAC_06449 Metarhizium acridum MAC_06449 N 0.000
MANI_018332 Metarhizium anisopliae MANI_018332 N 0.000
MBR_07492 Metarhizium brunneum MBR_07492 N 0.000
MGU_03784 Metarhizium guizhouense MGU_03784 N 0.000
NechaG50578 Fusarium solani NechaG50578 N 0.000
OCS_04024 Ophiocordyceps sinensis OCS_04024 N 0.000
OIDMADRAFT_141697 Oidiodendron maius OIDMADRAFT_141697 N 0.000
PODANS_2_2600 Podospora anserina PODANS_2_2600 N 0.000
PV05_05003 Exophiala xenobiotica PV05_05003 N 0.000
SBOR_10075 Sclerotinia borealis SBOR_10075 N 0.000
SNOG_13398 Stagonospora nodorum SNOG_13398 N 0.000
SNOG_13398 Phaeosphaeria nodorum SNOG_13398 N 0.000
SS1G_12488 Sclerotinia sclerotiorum SS1G_12488 N 0.000
V499_07080 Pseudogymnoascus pannorum V499_07080 N 0.000
VDAG_04562 Verticillium dahliae VDAG_04562 N 0.000
VDBG_09326 Verticillium alfalfae VDBG_09326 N 0.000
VDBG_09326 Verticillium albo atrum VDBG_09326 N 0.000
VHEMI10091 Torrubiella hemipterigena VHEMI10091 N 0.000
X797_003404 Metarhizium robertsii X797_003404 N 0.000
YALI0_D21230g Yarrowia lipolytica YALI0_D21230g N 0.000
Z519_04250 Cladophialophora bantiana Z519_04250 N 0.000