CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10021733m.g *(Citrus clementina)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Ciclev10021733m.g	T196490_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.867	1.000
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.867	1.000
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.851	0.917
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.847	0.889
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.847	0.889
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.847	0.889
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.843	0.806
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.843	0.806
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.837	0.861
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.837	0.861
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.837	0.861
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.833	0.778
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.832	0.806
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.832	0.806
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.830	0.778
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.819	0.806
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.819	0.806
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.819	0.806
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10021733m	GATA	167	202	CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLV

Links
Other GATA family TFs
Other *Citrus clementina* TFs

612 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA001121	Oryza indica	BGIOSGA001121	N	0.000
BRADI2G45117	Brachypodium distachyon	BRADI2G45117	N	0.000
GRMZM2G001426	Zea mays	GRMZM2G001426	N	0.000
MLOC_73617	Hordeum vulgare	MLOC_73617	N	0.000
OB01G33730	Oryza brachyantha	OB01G33730	N	0.000
OBART01G24520	Oryza barthii	OBART01G24520	N	0.000
OGLUM01G28380	Oryza glumaepatula	OGLUM01G28380	N	0.000
OMERI01G24610	Oryza meridionalis	OMERI01G24610	N	0.000
ONIVA01G27720	Oryza nivara	ONIVA01G27720	N	0.000
OPUNC01G24550	Oryza punctata	OPUNC01G24550	N	0.000
ORGLA01G0197900	Oryza glaberrima	ORGLA01G0197900	N	0.000
ORUFI01G27440	Oryza rufipogon	ORUFI01G27440	N	0.000
OS01G0646300	Oryza sativa	OS01G0646300	N	0.000
Pavir.J09720	Panicum virgatum	Pavir.J09720	N	0.000
Pavir.J11985	Panicum virgatum	Pavir.J11985	N	0.000
Sb03g029470	Sorghum bicolor	Sb03g029470	N	0.000
Si001293m.g	Setaria italica	Si001293m.g	N	0.000
TRAES3BF178300020CFD_g	Triticum aestivum	TRAES3BF178300020CFD_g	N	0.000

Ciclev10021733m.g (Citrus clementina) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

612 Related TFs

Ciclev10021733m.g **(Citrus clementina)
GATA**