Lus10042879.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10042879.g T196660_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.917
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.857 0.889
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.857 0.889
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.857 0.889
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.856 0.944
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.856 0.944
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.837 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.837 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.778
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042879 GATA 172 207

Links

Other GATA family TFs
Other Linum usitatissimum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG09320 Caenorhabditis briggsae CBG09320 I 0.000
CBG20727 Caenorhabditis briggsae CBG20727 I 0.000
CBG20729 Caenorhabditis briggsae CBG20729 I 0.000
CBN21486 Caenorhabditis brenneri CBN21486 I 0.000
CBN23838 Caenorhabditis brenneri CBN23838 I 0.000
CBN28290 Caenorhabditis brenneri CBN28290 I 0.000
CRE15644 Caenorhabditis remanei CRE15644 I 0.000
CRE15675 Caenorhabditis remanei CRE15675 I 0.000
CRE31070 Caenorhabditis remanei CRE31070 I 0.000
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.000
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.000
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.000
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.000
L596_g14532 Steinernema carpocapsae L596_g14532 I 0.000
L596_g14533 Steinernema carpocapsae L596_g14533 I 0.000
L596_g14537 Steinernema carpocapsae L596_g14537 I 0.000
L596_g14541 Steinernema carpocapsae L596_g14541 N 0.000
L596_g14578 Steinernema carpocapsae L596_g14578 N 0.000
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.000
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.000
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.000
L889_g6692 Steinernema feltiae L889_g6692 I 0.000
L889_g6694 Steinernema feltiae L889_g6694 I 0.000
L889_g6695 Steinernema feltiae L889_g6695 I 0.000
L889_g6792 Steinernema feltiae L889_g6792 I 0.000
L889_g6797 Steinernema feltiae L889_g6797 I 0.000
L889_g6798 Steinernema feltiae L889_g6798 I 0.000
L889_g6799 Steinernema feltiae L889_g6799 I 0.000
L889_g6803 Steinernema feltiae L889_g6803 N 0.000
L889_g6804 Steinernema feltiae L889_g6804 I 0.000
L889_g6806 Steinernema feltiae L889_g6806 N 0.000
L889_g8185 Steinernema feltiae L889_g8185 I 0.000
L889_g8187 Steinernema feltiae L889_g8187 I 0.000
L892_g10840 Steinernema scapterisci L892_g10840 N 0.000
L892_g10842 Steinernema scapterisci L892_g10842 I 0.000
L892_g10843 Steinernema scapterisci L892_g10843 I 0.000
L892_g14814 Steinernema scapterisci L892_g14814 N 0.000
L892_g14817 Steinernema scapterisci L892_g14817 I 0.000
L892_g14818 Steinernema scapterisci L892_g14818 I 0.000
L892_g14824 Steinernema scapterisci L892_g14824 N 0.000
L892_g14825 Steinernema scapterisci L892_g14825 I 0.000
L892_g2780 Steinernema scapterisci L892_g2780 I 0.000
L892_g2781 Steinernema scapterisci L892_g2781 I 0.000
L893_g18992 Steinernema glaseri L893_g18992 I 0.000
L893_g18993 Steinernema glaseri L893_g18993 I 0.000
L893_g27930 Steinernema glaseri L893_g27930 I 0.000
L893_g27935 Steinernema glaseri L893_g27935 N 0.000
L898_g12799 Steinernema monticolum L898_g12799 I 0.000
L898_g19012 Steinernema monticolum L898_g19012 I 0.000
L898_g19014 Steinernema monticolum L898_g19014 I 0.000
L898_g19019 Steinernema monticolum L898_g19019 I 0.000
L898_g19021 Steinernema monticolum L898_g19021 I 0.000
L898_g20180 Steinernema monticolum L898_g20180 I 0.000
L898_g21763 Steinernema monticolum L898_g21763 I 0.000
L898_g2943 Steinernema monticolum L898_g2943 N 0.000
L898_g2944 Steinernema monticolum L898_g2944 N 0.000
L898_g32142 Steinernema monticolum L898_g32142 N 0.000
L898_g3512 Steinernema monticolum L898_g3512 I 0.000
L898_g3514 Steinernema monticolum L898_g3514 I 0.000
L898_g3515 Steinernema monticolum L898_g3515 I 0.000
L898_g4012 Steinernema monticolum L898_g4012 I 0.000
L898_g4015 Steinernema monticolum L898_g4015 N 0.000
L898_g4016 Steinernema monticolum L898_g4016 N 0.000
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.000
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.000
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.000