CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ECPE_0000966901 *(Echinostoma caproni)* GCM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03615 (GCM)	IPR003902	ECPE_0000966901	T198244_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
gcm M03764_2.00	Drosophila melanogaster	HATGCGGGYVVBRCCCGCATV	BATGCGGGYVBBRCCCGCATD	SELEX Nitta et al.(2015) gcm_1	0.622	0.622
gcm M03765_2.00	Drosophila melanogaster	VATGCKGGYRCCMGCATV	BATGCKGGYRCCMGCATB	SELEX Nitta et al.(2015) gcm_2	0.622	0.622
gcm M03766_2.00	Drosophila melanogaster	YATGCGGGTACCAGCATV	BATGCTGGTACCCGCATR	SELEX Nitta et al.(2015) gcm_3	0.622	0.622
gcm M10605_2.00	Drosophila melanogaster	NDNATGCGGGYNB	VNRCCCGCATNHN	Transfac Matys et al.(2006) I$GCM_01	0.622	0.622
For this family, TFs with SR scores > 0.607* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ECPE_0000966901-mRNA-1	GCM	260	397	FDTFTMWPQGHCRFAYQKSASEGARRHASGWAMRNTNNHNAQILKKSCLGVLLCTNEGCPLAMRPAICDKARRRQEGRPCCMPNCNGRIYNQPCRGHGGYPVTHFWREHGDTVYFQSKGTHDHIRPDLKPVRDTAARR

Links
Other GCM family TFs
Other *Echinostoma caproni* TFs