PBX1 (Choloepus hoffmanni)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCHOG00000007502 T207778_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 1.000
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 1.000
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 1.000
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 1.000
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 1.000
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 1.000
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 1.000
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 1.000
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 1.000
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 1.000
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 1.000
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 1.000
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 1.000
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000006643 Homeodomain 233 292

Links

Other Homeodomain family TFs
Other Choloepus hoffmanni TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007097 Calypte anna Aan_R007097 I
ACOM041538 Anopheles coluzzii ACOM041538 I
ACYPI50903 Acyrthosiphon pisum ACYPI50903 I
Afo_R002906 Aptenodytes forsteri Afo_R002906 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
Alligator_sinensis_CCG017610.1 Alligator sinensis Alligator_sinensis_CCG017610.1 I
AMEM016790 Anopheles merus AMEM016790 I
ASTEI06455 Anopheles stephensi ASTEI06455 I
CapteG93575 Capitella teleta CapteG93575 I
CGI_10023990 Crassostrea gigas CGI_10023990 I
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I
D917_06660 Trichinella nativa D917_06660 I
D918_06798 Trichuris suis D918_06798 I
EBF1 Bos taurus ENSBTAG00000037508 I
EBF1 Canis familiaris ENSCAFG00000017318 I
EBF1 Callithrix jacchus ENSCJAG00000019016 I
EBF1 Cavia porcellus ENSCPOG00000026184 I
EBF1 Equus caballus ENSECAG00000007964 I
EBF1 Echinops telfairi ENSETEG00000011711 I
EBF1 Homo sapiens ENSG00000164330 D
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF1 Gallus gallus ENSGALG00000003699 I
EBF1 Gorilla gorilla ENSGGOG00000000033 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF1 Microcebus murinus ENSMICG00000010036 I
EBF1 Monodelphis domestica ENSMODG00000008198 I
Ebf1 Mus musculus ENSMUSG00000057098 D
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I
EBF1 Oryzias latipes ENSORLG00000002342 I
EBF1 Oryzias latipes ENSORLG00000007471 I
EBF1 Pan troglodytes ENSPTRG00000017477 I
Ebf1 Rattus norvegicus ENSRNOG00000028845 I
EBF1 Taeniopygia guttata ENSTGUG00000000593 I
EBF1 Takifugu rubripes ENSTRUG00000009320 I
EBF1 Tursiops truncatus ENSTTRG00000009929 I
ebf1a Danio rerio ENSDARG00000099849 I
ebf1b Danio rerio ENSDARG00000069196 I
EBF2 Bos taurus ENSBTAG00000040390 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF2 Callithrix jacchus ENSCJAG00000019921 I
EBF2 Cavia porcellus ENSCPOG00000001463 I
ebf2 Danio rerio ENSDARG00000042525 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
EBF2 Homo sapiens ENSG00000221818 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF2 Monodelphis domestica ENSMODG00000016702 I
Ebf2 Mus musculus ENSMUSG00000022053 D
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
EBF2 Pteropus vampyrus ENSPVAG00000024254 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
EBF2 Sus scrofa ENSSSCG00000009655 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I
ebf2 Takifugu rubripes ENSTRUG00000011528 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.S Xenopus laevis XB-GENE-971141 I
EBF3 Anolis carolinensis ENSACAG00000008590 I
EBF3 Cavia porcellus ENSCPOG00000005096 I
EBF3 Echinops telfairi ENSETEG00000014060 I
EBF3 Homo sapiens ENSG00000108001 D
EBF3 Macaca mulatta ENSMMUG00000011447 I
Ebf3 Mus musculus ENSMUSG00000010476 I
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I
EBF3 Otolemur garnettii ENSOGAG00000007572 I
Ebf3 Rattus norvegicus ENSRNOG00000016102 I
EBF3 Taeniopygia guttata ENSTGUG00000011600 I
EBF3 Tursiops truncatus ENSTTRG00000014010 I
ebf3 Xenopus tropicalis XB-GENE-962543 I
ebf3a Danio rerio ENSDARG00000100244 I
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I
ebf3a Oryzias latipes ENSORLG00000005870 I
ebf3b Danio rerio ENSDARG00000091287 I
EBF4 Bos taurus ENSBTAG00000037757 I
EBF4 Canis familiaris ENSCAFG00000006631 I
EBF4 Callithrix jacchus ENSCJAG00000021027 I
EBF4 Cavia porcellus ENSCPOG00000004862 I
EBF4 Echinops telfairi ENSETEG00000015956 I
EBF4 Homo sapiens ENSG00000088881 D
EBF4 Gorilla gorilla ENSGGOG00000015503 I
EBF4 Myotis lucifugus ENSMLUG00000023832 I
EBF4 Monodelphis domestica ENSMODG00000005256 I
Ebf4 Mus musculus ENSMUSG00000053552 D
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I
EBF4 Otolemur garnettii ENSOGAG00000004688 I
EBF4 Ochotona princeps ENSOPRG00000013703 I
EBF4 Oryzias latipes ENSORLG00000020414 I
EBF4 Procavia capensis ENSPCAG00000011947 I
EBF4 Pteropus vampyrus ENSPVAG00000006830 I
Ebf4 Rattus norvegicus ENSRNOG00000007408 I
EBF4 Sus scrofa ENSSSCG00000007171 I
EBF4 Tursiops truncatus ENSTTRG00000003459 I
ebf4 Xenopus tropicalis XB-GENE-6030626 I
EFV50386 Trichinella spiralis EFV50386 I
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I
ENSAMXG00000021198 Astyanax mexicanus ENSAMXG00000021198 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
ENSBTAG00000047164 Bos taurus ENSBTAG00000047164 I
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I
ENSFALG00000008502 Ficedula albicollis ENSFALG00000008502 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I
ENSGMOG00000010328 Gadus morhua ENSGMOG00000010328 I
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I
ENSMEUG00000001579 Macropus eugenii ENSMEUG00000001579 N
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
ENSOANG00000005673 Ornithorhynchus anatinus ENSOANG00000005673 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I
ENSSSCG00000025415 Sus scrofa ENSSSCG00000025415 I
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I
GH25280 Drosophila grimshawi FBgn0132735 I
HelroG112029 Helobdella robusta HelroG112029 I
ISCW021819 Ixodes scapularis ISCW021819 I
KGM_09934 Danaus plexippus KGM_09934 I
L798_15574 Zootermopsis nevadensis L798_15574 I
LCUP013861 Lucilia cuprina LCUP013861 I
LotgiG225788 Lottia gigantea LotgiG225788 I
MCINX016127 Melitaea cinxia MCINX016127 I
MDOA011385 Musca domestica MDOA011385 I
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I
Ocbimv22038947m.g Octopus bimaculoides Ocbimv22038947m.g N
Ogr09591 Ophisaurus gracilis Ogr09591 I
Ogr13832 Ophisaurus gracilis Ogr13832 I
PHUM119360 Pediculus humanus PHUM119360 I
PTRK_0001642500 Parastrongyloides trichosuri PTRK_0001642500 I
Pvit_04283 Pogona vitticeps Pvit_04283 I
Pvit_16838 Pogona vitticeps Pvit_16838 I
Sakowv30011013m.g Saccoglossus kowalevskii Sakowv30011013m.g I
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I
SMAR000842 Strigamia maritima SMAR000842 I
SPAL_0001132500 Strongyloides papillosus SPAL_0001132500 I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
SSTP_0000472000 Strongyloides stercoralis SSTP_0000472000 I
SVE_0119400 Strongyloides venezuelensis SVE_0119400 I
TC001270 Tribolium castaneum TC001270 I
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I