irx1b (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000009006 T210065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mirr
M06514_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0233.1 		0.824 0.912
mirr
M06305_2.00 		Drosophila melanogaster
NDNWWACA
TGTWWNHN		 B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343 		0.824 0.912
mirr
M06306_2.00 		Drosophila melanogaster
DDWACA
TGTWHH		 B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343 		0.824 0.912
Irx3
M00453_2.00 		Mus musculus
NNDACAHNNN
NNNDTGTHNN		 PBM
Berger et al.(2008)
Irx3_0920 		0.824 0.895
Irx3
M00454_2.00 		Mus musculus
NNDACWHN
NDWGTHNN		 PBM
Berger et al.(2008)
Irx3_2226 		0.824 0.895
Irx3
M03266_2.00 		Mus musculus
WWTKTCATGTWR
YWACATGAMAWW		 SELEX
Jolma et al.(2013)
Irx3_1 		0.824 0.895
IRX1
M05283_2.00 		Homo sapiens
DDCRHNNNNNNNNDYGHH
DDCRHNNNNNNNNDYGHH		 SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX 		0.824 0.895
IRX3
M05319_2.00 		Homo sapiens
DACAHGNWWWWNCDTGTH
DACAHGNWWWWNCDTGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX 		0.824 0.895
IRX1
M05284_2.00 		Homo sapiens
NNCRHNNNNNNNNDYVHN
NDBRHNNNNNNNNDYGNN		 SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX 		0.824 0.895
IRX3
M05320_2.00 		Homo sapiens
DACRYRHNWWNDYKCGTW
WACGMRHNWWNDYRYGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX 		0.824 0.895
SNAPOd2T00005194001
M02229_2.00 		Oikopleura dioica
NNTACATGTDN
NHACATGTANN		 PBM
Weirauch et al.(2014)
pTH5976 		0.802 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000011891 Homeodomain 118 174

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026544 Oryza indica BGIOSGA026544 N
BGIOSGA026545 Oryza indica BGIOSGA026545 N
GRMZM2G124011 Zea mays GRMZM2G124011 I
GRMZM2G175856 Zea mays GRMZM2G175856 N
OGLUM08G23770 Oryza glumaepatula OGLUM08G23770 N
OPUNC09G15260 Oryza punctata OPUNC09G15260 I
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I
Pavir.Fa00114 Panicum virgatum Pavir.Fa00114 N
Pavir.J32829 Panicum virgatum Pavir.J32829 N
Sb07g025210 Sorghum bicolor Sb07g025210 N