six5 (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000009721 T210084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.843 0.868
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.843 0.868
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.843 0.868
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.843 0.868
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.843 0.868
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.842 0.811
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.842 0.811
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.842 0.811
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.842 0.811
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.822 0.792
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.822 0.792
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.822 0.792
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.822 0.792
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.822 0.792
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.702 0.679
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.702 0.679
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.702 0.679
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.702 0.679
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.702 0.679
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.702 0.679
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.702 0.679
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.702 0.679
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.702 0.660
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.702 0.660
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.702 0.660
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.702 0.660
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.702 0.660
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.702 0.660
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.702 0.660
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.702 0.660
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.702 0.660
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.702 0.660
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.702 0.660
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.702 0.660
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.702 0.660
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.702 0.660
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.702 0.660
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.702 0.660
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.702 0.660
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.702 0.660
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.628 0.566
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000012821 Homeodomain 169 221

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

541 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003668 Calypte anna Aan_R003668 I 0.000
Aan_R014758 Calypte anna Aan_R014758 I 0.000
Afo_R004007 Aptenodytes forsteri Afo_R004007 I 0.000
Afo_R008251 Aptenodytes forsteri Afo_R008251 I 0.000
Alligator_sinensis_CCG011250.1 Alligator sinensis Alligator_sinensis_CCG011250.1 I 0.000
Alligator_sinensis_CCG014066.1 Alligator sinensis Alligator_sinensis_CCG014066.1 I 0.000
Brh_R001493 Buceros rhinoceros Brh_R001493 I 0.000
Brh_R005182 Buceros rhinoceros Brh_R005182 I 0.000
Cmyd_10009615 Chelonia mydas Cmyd_10009615 I 0.000
Cmyd_10021057 Chelonia mydas Cmyd_10021057 I 0.000
ENSAMEG00000004258 Ailuropoda melanoleuca ENSAMEG00000004258 I 0.000
ENSAMXG00000006043 Astyanax mexicanus ENSAMXG00000006043 I 0.000
ENSAPLG00000008859 Anas platyrhynchos ENSAPLG00000008859 I 0.000
ENSDORG00000003955 Dipodomys ordii ENSDORG00000003955 I 0.000
ENSFALG00000013520 Ficedula albicollis ENSFALG00000013520 I 0.000
ENSFALG00000014467 Ficedula albicollis ENSFALG00000014467 I 0.000
ENSLACG00000006364 Latimeria chalumnae ENSLACG00000006364 I 0.000
ENSLOCG00000002769 Lepisosteus oculatus ENSLOCG00000002769 I 0.000
ENSMPUG00000004162 Mustela putorius furo ENSMPUG00000004162 I 0.000
ENSNLEG00000000773 Nomascus leucogenys ENSNLEG00000000773 I 0.000
ENSOARG00000020237 Ovis aries ENSOARG00000020237 I 0.000
ENSP00000356322-D1 Bos grunniens ENSP00000356322-D1 I 0.000
ENSP00000420448 Macaca fascicularis ENSP00000420448 I 0.000
ENSP00000420448-D1 Bos grunniens ENSP00000420448-D1 I 0.000
ENSPANG00000004284 Papio anubis ENSPANG00000004284 I 0.000
ENSPFOG00000004115 Poecilia formosa ENSPFOG00000004115 I 0.000
ENSPPYG00000013462 Pongo abelii ENSPPYG00000013462 I 0.000
ENSPSIG00000003614 Pelodiscus sinensis ENSPSIG00000003614 I 0.000
ENSSHAG00000013855 Sarcophilus harrisii ENSSHAG00000013855 I 0.000
ENSSTOG00000027082 Ictidomys tridecemlineatus ENSSTOG00000027082 I 0.000
Gfo_R001184 Geospiza fortis Gfo_R001184 I 0.000
Gfo_R006633 Geospiza fortis Gfo_R006633 I 0.000
Ogr00130 Ophisaurus gracilis Ogr00130 I 0.000
Pvit_03082 Pogona vitticeps Pvit_03082 I 0.000
Tal_R010113 Tyto alba Tal_R010113 I 0.000
Tal_R010256 Tyto alba Tal_R010256 I 0.000
Zfp148 Mus musculus ENSMUSG00000022811 I 0.000
Zfp148 Rattus norvegicus ENSRNOG00000001789 I 0.000
ZNF148 Dasypus novemcinctus ENSDNOG00000000280 I 0.000
ZNF148 Homo sapiens ENSG00000163848 D 0.000
ZNF148 Equus caballus ENSECAG00000013557 I 0.000
ZNF148 Echinops telfairi ENSETEG00000002856 I 0.000
ZNF148 Felis catus ENSFCAG00000026852 I 0.000
ZNF148 Macaca mulatta ENSMMUG00000001169 I 0.000
znf148 Danio rerio ENSDARG00000055106 I 0.000
ZNF148 Callithrix jacchus ENSCJAG00000006741 I 0.000
ZNF148 Canis familiaris ENSCAFG00000012574 I 0.000
ZNF148 Bos taurus ENSBTAG00000040031 I 0.000
znf148 Xenopus tropicalis XB-GENE-996852 I 0.000
ZNF148 Gallus gallus ENSGALG00000012049 I 0.000
ZNF148 Loxodonta africana ENSLAFG00000016025 I 0.000
ZNF148 Otolemur garnettii ENSOGAG00000013652 I 0.000
ZNF148 Monodelphis domestica ENSMODG00000018374 I 0.000
ZNF148 Tursiops truncatus ENSTTRG00000014714 I 0.000
znf148 Takifugu rubripes ENSTRUG00000006270 I 0.000
ZNF148 Taeniopygia guttata ENSTGUG00000004010 I 0.000
ZNF148 Tupaia belangeri ENSTBEG00000008435 I 0.000
ZNF148 Sus scrofa ENSSSCG00000011858 I 0.000
ZNF148 Sorex araneus ENSSARG00000007257 I 0.000
ZNF148 Pteropus vampyrus ENSPVAG00000006133 I 0.000
ZNF148 Anolis carolinensis ENSACAG00000010047 I 0.000
znf148 Oryzias latipes ENSORLG00000015950 I 0.000
ZNF148 Ochotona princeps ENSOPRG00000010519 I 0.000
ZNF281 Taeniopygia guttata ENSTGUG00000004438 I 0.000
ZNF281 Ornithorhynchus anatinus ENSOANG00000004857 I 0.000