irx5a (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000016681 T210149_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.858 0.947
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.858 0.947
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.858 0.947
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.858 0.947
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.858 0.947
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.858 0.947
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.814 0.912
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.814 0.912
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.814 0.912
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.806 0.877
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.806 0.877
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.772 0.842
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.772 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000022023 Homeodomain 112 171
ENSGACP00000022024 Homeodomain 112 171

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

388 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAC59859 Xenopus laevis AAC59859 N 0.000
AAEL011380 Aedes aegypti AAEL011380 N 0.000
AAH44009 Xenopus laevis AAH44009 N 0.000
AAH73449 Xenopus laevis AAH73449 N 0.000
AALB006743 Anopheles albimanus AALB006743 N 0.000
AARA010318 Anopheles arabiensis AARA010318 N 0.000
AATE010886 Anopheles atroparvus AATE010886 N 0.000
AATE018776 Anopheles atroparvus AATE018776 N 0.000
ACEP16613 Atta cephalotes ACEP16613 N 0.000
ACUA021022 Anopheles culicifacies ACUA021022 N 0.000
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.000
ADAC001494 Anopheles darlingi ADAC001494 N 0.000
ADIR011701 Anopheles dirus ADIR011701 N 0.000
AEPI002924 Anopheles epiroticus AEPI002924 N 0.000
AFAF003948 Anopheles farauti AFAF003948 N 0.000
AFAF009984 Anopheles farauti AFAF009984 N 0.000
AFUN010134 Anopheles funestus AFUN010134 N 0.000
AGAP000005 Anopheles gambiae AGAP000005 N 0.000
AMAM015540 Anopheles maculatus AMAM015540 N 0.000
AMEC021909 Anopheles melas AMEC021909 N 0.000
AMEM017336 Anopheles merus AMEM017336 N 0.000
AMIN005344 Anopheles minimus AMIN005344 N 0.000
AQUA004962 Anopheles quadriannulatus AQUA004962 N 0.000
ASIS000124 Anopheles sinensis ASIS000124 N 0.000
ASIS009950 Anopheles sinensis ASIS009950 N 0.000
BGIBMGA001132 Bombyx mori BGIBMGA001132 N 0.000
CapteG158220 Capitella teleta CapteG158220 N 0.000
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.000
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.000
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.000
csin112095 Clonorchis sinensis csin112095 N 0.000
D915_00818 Fasciola hepatica D915_00818 N 0.000
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.000
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N 0.000
Dsp1 Drosophila melanogaster FBgn0011764 N 0.000
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.000
ENSAMXG00000014832 Astyanax mexicanus ENSAMXG00000014832 N 0.000
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.000
ENSCJAG00000004401 Callithrix jacchus ENSCJAG00000004401 N 0.000
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.000
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.000
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.000
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.000
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.000
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.000
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.000
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.000
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.000
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.000
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.000
ENSPANG00000010595 Papio anubis ENSPANG00000010595 N 0.000
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.000
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.000
ENSPMAG00000007397 Petromyzon marinus ENSPMAG00000007397 N 0.000
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.000
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.000
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.000
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.000
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.000
GB47828 Apis mellifera GB47828 N 0.000
GD17278 Drosophila simulans FBgn0188840 N 0.000
GE17263 Drosophila yakuba FBgn0234741 N 0.000
GF19115 Drosophila ananassae FBgn0096126 N 0.000
GG17955 Drosophila erecta FBgn0110175 N 0.000
GH12282 Drosophila grimshawi FBgn0119761 N 0.000
GI10980 Drosophila mojavensis FBgn0133743 N 0.000
GJ19445 Drosophila virilis FBgn0206588 N 0.000
GK25058 Drosophila willistoni FBgn0227017 N 0.000
HelroG157878 Helobdella robusta HelroG157878 N 0.000
HelroG87827 Helobdella robusta HelroG87827 N 0.000
HMEL007340 Heliconius melpomene HMEL007340 N 0.000
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.000
hmgb1a Danio rerio ENSDARG00000099175 N 0.000
hmgb1a Oryzias latipes ENSORLG00000003400 N 0.000
hmgb1a Tetraodon nigroviridis ENSTNIG00000009909 N 0.000
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.000
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.000
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.000
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.000
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.000
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.000
hmgb2a Danio rerio ENSDARG00000029722 N 0.000
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.000
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.000
hmgb3b Danio rerio ENSDARG00000006408 N 0.000
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.000
ISCW017350 Ixodes scapularis ISCW017350 N 0.000
LCUP007363 Lucilia cuprina LCUP007363 N 0.000
LDEC006842 Leptinotarsa decemlineata LDEC006842 N 0.000
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.000
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.000
MDOA008812 Musca domestica MDOA008812 N 0.000
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.000
Myotis_brandtii_HMGB3_10026974 Myotis brandtii Myotis_brandtii_HMGB3_10026974 N 0.000
NV15664 Nasonia vitripennis NV15664 N 0.000
PHUM006290 Pediculus humanus PHUM006290 N 0.000
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.000
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.000
RPRC006379 Rhodnius prolixus RPRC006379 N 0.000
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.000
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.000
SINV22586 Solenopsis invicta SINV22586 N 0.000
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.000
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.000
SMAR013695 Strigamia maritima SMAR013695 N 0.000
Smp_000980 Schistosoma mansoni Smp_000980 N 0.000
Smp_100090 Schistosoma mansoni Smp_100090 N 0.000
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.000
SMU15002907 Schmidtea mediterranea SMU15002907 N 0.000
SMU15016767 Schmidtea mediterranea SMU15016767 N 0.000
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.000
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.000
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.000
T265_10726 Opisthorchis viverrini T265_10726 N 0.000
T265_12733 Opisthorchis viverrini T265_12733 N 0.000
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.000
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.000
TsM_000115400 Taenia solium TsM_000115400 N 0.000
YQE_03203 Dendroctonus ponderosae YQE_03203 N 0.000