IRX4 (Ochotona princeps)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOPRG00000008518 T213749_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000007795 Homeodomain 142 200

Links

Other Homeodomain family TFs
Other Ochotona princeps TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002623 Ricinus communis 30068.m002623 I 0.000
30174.m008961 Ricinus communis 30174.m008961 I 0.000
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.000
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.000
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.000
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.000
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.000
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.000
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.000
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.000
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.000
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.000
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.000
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.000
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.000
Ca_00417 Cicer arietinum Ca_00417 I 0.000
Ca_16397 Cicer arietinum Ca_16397 I 0.000
Ca_25424 Cicer arietinum Ca_25424 I 0.000
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.000
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.000
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.000
Cla005054 Citrullus lanatus Cla005054 N 0.000
Cla010474 Citrullus lanatus Cla010474 I 0.000
Cla021590 Citrullus lanatus Cla021590 I 0.000
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.000
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.000
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.000
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.000
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.000
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.000
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.000
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.000
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.000
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.000
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.000
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.000
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.000
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.000
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.000
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.000
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.000
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.000
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.000
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.000
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.000
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.000
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.000
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.000
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.000
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.000
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.000
MDP0000127123 Malus domestica MDP0000127123 N 0.000
MDP0000133476 Malus domestica MDP0000133476 I 0.000
MDP0000138669 Malus domestica MDP0000138669 I 0.000
MDP0000316843 Malus domestica MDP0000316843 N 0.000
mgf018851m Mimulus guttatus mgf018851m I 0.000
mgf024137m Mimulus guttatus mgf024137m N 0.000
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.000
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.000
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.000
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.000
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.000
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.000
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.000
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.000
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.000
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.000
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.000
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.000
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.000
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.000
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.000
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.000
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.000
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.000
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.000
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.000
PK25269.1 Cannabis sativa PK25269.1 I 0.000
PK28640.1 Cannabis sativa PK28640.1 I 0.000
Pm008788 Prunus mume Pm008788 I 0.000
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.000
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.000
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.000
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.000
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.000
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.000
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.000
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.000
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.000
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.000
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.000
Si024417m.g Setaria italica Si024417m.g I 0.000
Si032213m.g Setaria italica Si032213m.g I 0.000
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.000
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.000
TCM_005425 Theobroma cacao TCM_005425 I 0.000
TCM_015579 Theobroma cacao TCM_015579 I 0.000
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.000