SIX6 (Procavia capensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPCAG00000001296 T214198_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001178 Homeodomain 180 236

Links

Other Homeodomain family TFs
Other Procavia capensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007611 Ailuropoda melanoleuca ENSAMEG00000007611 I
ENSBTAG00000043974 Bos taurus ENSBTAG00000043974 I
ENSCSAG00000005878 Chlorocebus sabaeus ENSCSAG00000005878 I
ENSLAFG00000031653 Loxodonta africana ENSLAFG00000031653 I
ENSMEUG00000000503 Macropus eugenii ENSMEUG00000000503 I
ENSNLEG00000015875 Nomascus leucogenys ENSNLEG00000015875 I
ENSOARG00000010779 Ovis aries ENSOARG00000010779 I
ENSP00000369777 Macaca fascicularis ENSP00000369777 I
ENSPANG00000016539 Papio anubis ENSPANG00000016539 I
ENSPPYG00000007277 Pongo abelii ENSPPYG00000007277 I
ENSSHAG00000008255 Sarcophilus harrisii ENSSHAG00000008255 I
Myotis_brandtii_ZNF768_10014481 Myotis brandtii Myotis_brandtii_ZNF768_10014481 I
Zfp768 Dipodomys ordii ENSDORG00000009870 I
ZNF768 Pteropus vampyrus ENSPVAG00000010064 I
ZNF768 Equus caballus ENSECAG00000008014 I
ZNF768 Vicugna pacos ENSVPAG00000010456 I
ZNF768 Tursiops truncatus ENSTTRG00000001737 I
ZNF768 Tupaia belangeri ENSTBEG00000004851 I
ZNF768 Sus scrofa ENSSSCG00000023349 I
ZNF768 Felis catus ENSFCAG00000009798 I
Znf768 Rattus norvegicus ENSRNOG00000029490 I
ZNF768 Cavia porcellus ENSCPOG00000005238 I
ZNF768 Pan troglodytes ENSPTRG00000008006 I
ZNF768 Homo sapiens ENSG00000169957 D
ZNF768 Gorilla gorilla ENSGGOG00000002196 I
ZNF768 Otolemur garnettii ENSOGAG00000033980 I
ZNF768 Dasypus novemcinctus ENSDNOG00000017198 I
ZNF768 Canis familiaris ENSCAFG00000029911 I
ZNF768 Monodelphis domestica ENSMODG00000027841 I
ZNF768 Macaca mulatta ENSMMUG00000016879 I