CDX2 (Sus scrofa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSSCG00000009317 T215819_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.867 1.000
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.867 1.000
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.867 1.000
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.867 1.000
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.867 1.000
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.867 1.000
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.867 1.000
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.867 1.000
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.867 1.000
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.862 0.965
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.862 0.965
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.862 0.965
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.855 0.965
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.855 0.965
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.855 0.947
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.855 0.947
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.855 0.947
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.855 0.947
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.855 0.947
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.855 0.947
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.855 0.947
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.855 0.947
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.851 0.877
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.851 0.877
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.851 0.877
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.851 0.877
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.851 0.877
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.851 0.877
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.851 0.877
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.851 0.877
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.851 0.877
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.851 0.877
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.851 0.877
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.834 0.895
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.819 0.895
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.819 0.877
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.819 0.877
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.819 0.877
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.684
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.641 0.702
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.613 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000009941 Homeodomain 187 243

Links

Other Homeodomain family TFs
Other Sus scrofa TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_07437 Capronia coronata A1O1_07437 I
A1O3_08281 Capronia epimyces A1O3_08281 I
A1O5_04770 Cladophialophora psammophila A1O5_04770 N
A1O9_02783 Exophiala aquamarina A1O9_02783 I
ACLA_097790 Aspergillus clavatus CADACLAG00009233 I
ACRE_041000 Acremonium chrysogenum ACRE_041000 I
AFUA_6G02690 Aspergillus fumigatus CADAFUAG00000511 I
ANIA_08741 Aspergillus nidulans CADANIAG00006327 I
AOL_s00004g659 Arthrobotrys oligospora AOL_s00004g659 I
ARB_01804 Arthroderma benhamiae ARB_01804 I
ATEG_07186 Aspergillus terreus CADATEAG00001686 I
AUEXF2481DRAFT_24574 Aureobasidium subglaciale AUEXF2481DRAFT_24574 I
BAUCODRAFT_124151 Baudoinia compniacensis BAUCODRAFT_124151 I
BBA_03181 Beauveria bassiana BBA_03181 I
Bcin09g04000 Botrytis cinerea Bcin09g04000 I
BDDG_05952 Blastomyces dermatitidis BDDG_05952 I
BGHDH14_bgh05048 Blumeria graminis BGHDH14_bgh05048 I
CADAFLAG00008834 Aspergillus flavus CADAFLAG00008834 I
CADANGAG00010257 Aspergillus niger CADANGAG00010257 I
CADAORAG00011314 Aspergillus oryzae CADAORAG00011314 I
CCM_04849 Cordyceps militaris CCM_04849 I
CFIO01_02960 Colletotrichum fioriniae CFIO01_02960 I
CGGC5_9219 Colletotrichum gloeosporioides CGGC5_9219 I
CH063_07646 Colletotrichum higginsianum CH063_07646 I
CHGG_06306 Chaetomium globosum CHGG_06306 I
CIMG_10049 Coccidioides immitis CIMG_10049 I
CMQ_5498 Grosmannia clavigera CMQ_5498 I
Cob_05779 Colletotrichum orbiculare Cob_05779 I
COCC4DRAFT_123864 Bipolaris maydis COCC4DRAFT_123864 I
COCCADRAFT_81622 Bipolaris zeicola COCCADRAFT_81622 I
COCMIDRAFT_103312 Bipolaris oryzae COCMIDRAFT_103312 I
COCSADRAFT_207272 Bipolaris sorokiniana COCSADRAFT_207272 I
COCVIDRAFT_91551 Bipolaris victoriae COCVIDRAFT_91551 I
CPC735_011910 Coccidioides posadasii CPC735_011910 I
CPUR_04653 Claviceps purpurea CPUR_04653 I
CSUB01_11666 Colletotrichum sublineola CSUB01_11666 I
CTHT_0014240 Chaetomium thermophilum CTHT_0014240 I
DOTSEDRAFT_68386 Dothistroma septosporum DOTSEDRAFT_68386 I
EPUS_00352 Endocarpon pusillum EPUS_00352 I
estExt_fgenesh1_pg.C_20162 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_20162 I
estExt_fgenesh3_kg.C_70245 Neurospora discreta estExt_fgenesh3_kg.C_70245 I
EURHEDRAFT_451933 Aspergillus ruber EURHEDRAFT_451933 I
EV44_g5656 Erysiphe necator EV44_g5656 I
e_gw1.00855.183.1 Aspergillus carbonarius e_gw1.00855.183.1 I
e_gw1.1.1014.1 Mycosphaerella fijiensis e_gw1.1.1014.1 I
e_gw1.1.4254.1 Mycosphaerella graminicola e_gw1.1.4254.1 I
FFUJ_04251 Fusarium fujikuroi FFUJ_04251 I
fgenesh1_pg.sca_18_chr2_1_0000868 Nectria haematococca fgenesh1_pg.sca_18_chr2_1_0000868 I
FGRRES_09410 Fusarium graminearum FGRRES_09410 I
FOXG_06083 Fusarium oxysporum FOXG_06083 I
FPSE_05112 Fusarium pseudograminearum FPSE_05112 I
GGTG_10332 Gaeumannomyces graminis GGTG_10332 I
GLRG_07822 Colletotrichum graminicola GLRG_07822 I
GMDG_02388 Pseudogymnoascus destructans GMDG_02388 I
GSTUM_00004702001 Tuber melanosporum GSTUM_00004702001 I
H101_03296 Trichophyton interdigitale H101_03296 I
H102_08745 Trichophyton rubrum H102_08745 I
H105_08771 Trichophyton soudanense H105_08771 I
HCBG_02913 Histoplasma capsulatum HCBG_02913 I
HMPREF1120_04884 Exophiala dermatitidis HMPREF1120_04884 I
HMPREF1541_04620 Cyphellophora europaea HMPREF1541_04620 I
HMPREF1624_04682 Sporothrix schenckii HMPREF1624_04682 I
LEMA_P041320.1 Leptosphaeria maculans LEMA_P041320.1 I
M437DRAFT_48363 Aureobasidium melanogenum M437DRAFT_48363 I
M438DRAFT_313334 Aureobasidium pullulans M438DRAFT_313334 I
MAC_06655 Metarhizium acridum MAC_06655 I
MAJ_03429 Metarhizium majus MAJ_03429 I
MANI_000776 Metarhizium anisopliae MANI_000776 I
MAPG_02496 Magnaporthe poae MAPG_02496 I
MBM_06471 Marssonina brunnea MBM_06471 I
MBR_06925 Metarhizium brunneum MBR_06925 I
MCYG_03048 Microsporum canis MCYG_03048 I
MCYG_03048 Arthroderma otae MCYG_03048 I
MGG_12536 Magnaporthe oryzae MGG_12536 I
MGYG_00220 Microsporum gypseum MGYG_00220 I
MPH_04617 Macrophomina phaseolina MPH_04617 I
MYCFIDRAFT_209985 Pseudocercospora fijiensis MYCFIDRAFT_209985 I
Mycgr3G31676 Zymoseptoria tritici Mycgr3G31676 I
MYCTH_2297579 Myceliophthora thermophila MYCTH_2297579 I
NCU03184 Neurospora crassa NCU03184 D
NechaG76677 Fusarium solani NechaG76677 I
NEUTE1DRAFT_126104 Neurospora tetrasperma NEUTE1DRAFT_126104 I
NFIA_049000 Neosartorya fischeri CADNFIAG00005354 I
OIDMADRAFT_115397 Oidiodendron maius OIDMADRAFT_115397 I
PAAG_04503 Paracoccidioides sp lutzii PAAG_04503 I
PABG_04286 Paracoccidioides brasiliensis PABG_04286 I
Pc22g24110 Penicillium chrysogenum Pc22g24110 I
PCH_Pc22g24110 Penicillium rubens PCH_Pc22g24110 I
PDE_03425 Penicillium oxalicum PDE_03425 I
PDIP_61610 Penicillium digitatum PDIP_61610 I
PEX1_012340 Penicillium expansum PEX1_012340 I
PFICI_02997 Pestalotiopsis fici PFICI_02997 I
PITC_054050 Penicillium italicum PITC_054050 I
PMAA_092990 Talaromyces marneffei PMAA_092990 I
PMAA_092990 Penicillium marneffei PMAA_092990 I
PTRG_05588 Pyrenophora triticirepentis PTRG_05588 I
PTT_15591 Pyrenophora teres PTT_15591 I
PV06_09652 Exophiala oligosperma PV06_09652 I
PV07_07040 Cladophialophora immunda PV07_07040 N
PV08_03834 Exophiala spinifera PV08_03834 I
PV09_00302 Verruconis gallopava PV09_00302 I
PV10_05881 Exophiala mesophila PV10_05881 I
PV11_09518 Exophiala sideris PV11_09518 I
PVAR5_0203 Byssochlamys spectabilis PVAR5_0203 I
S40285_08790 Stachybotrys chlorohalonata S40285_08790 I
S40288_04756 Stachybotrys chartarum S40288_04756 I
SAPIO_CDS10068 Scedosporium apiospermum SAPIO_CDS10068 I
SBOR_4818 Sclerotinia borealis SBOR_4818 I
SEPMUDRAFT_77933 Sphaerulina musiva SEPMUDRAFT_77933 I
SETTUDRAFT_125422 Setosphaeria turcica SETTUDRAFT_125422 I
SMAC_02906 Sordaria macrospora SMAC_02906 I
SNOG_07718 Stagonospora nodorum SNOG_07718 I
SPBR_05957 Sporothrix brasiliensis SPBR_05957 I
TEQG_06435 Trichophyton equinum TEQG_06435 I
TESG_00820 Trichophyton tonsurans TESG_00820 I
THITE_2112134 Thielavia terrestris THITE_2112134 I
TRIATDRAFT_41152 Trichoderma atroviride TRIATDRAFT_41152 I
TRIREDRAFT_4921 Trichoderma reesei TRIREDRAFT_4921 I
TRIVIDRAFT_57749 Trichoderma virens TRIVIDRAFT_57749 I
TRV_03506 Trichophyton verrucosum TRV_03506 I
TSTA_048570 Talaromyces stipitatus TSTA_048570 I
U727_0043123131 Penicillium solitum U727_0043123131 I
UCRNP2_8268 Neofusicoccum parvum UCRNP2_8268 I
UV8b_5144 Ustilaginoidea virens UV8b_5144 I
VDAG_01718 Verticillium dahliae VDAG_01718 I
VDBG_01834 Verticillium albo atrum VDBG_01834 I
VDBG_01834 Verticillium alfalfae VDBG_01834 I
VHEMI06571 Torrubiella hemipterigena VHEMI06571 I
W97_05560 Coniosporium apollinis W97_05560 I
X797_008515 Metarhizium robertsii X797_008515 I