OBART01G31750 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART01G31750 T221298_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.772 0.684
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.772 0.684
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.772 0.684
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.746 0.596
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.746 0.596
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.746 0.596
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.746 0.596
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.744 0.649
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.744 0.649
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.744 0.649
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.740 0.614
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.740 0.614
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.732 0.579
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.710 0.561
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.710 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G31750.1 Homeodomain 96 152

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

604 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00576s150 Brassica oleracea Bo00576s150 N 0.000
Bo01294s010 Brassica oleracea Bo01294s010 N 0.000
Bo1g028470 Brassica oleracea Bo1g028470 N 0.000
Bo1g101570 Brassica oleracea Bo1g101570 N 0.000
Bo1g101740 Brassica oleracea Bo1g101740 N 0.000
Bo2g050430 Brassica oleracea Bo2g050430 N 0.000
Bo2g134150 Brassica oleracea Bo2g134150 N 0.000
Bo3g003580 Brassica oleracea Bo3g003580 N 0.000
Bo3g107290 Brassica oleracea Bo3g107290 N 0.000
Bo4g161430 Brassica oleracea Bo4g161430 N 0.000
Bo4g162580 Brassica oleracea Bo4g162580 N 0.000
Bo5g041280 Brassica oleracea Bo5g041280 N 0.000
Bo5g075210 Brassica oleracea Bo5g075210 N 0.000
Bo5g111170 Brassica oleracea Bo5g111170 N 0.000
Bo6g008140 Brassica oleracea Bo6g008140 N 0.000
Bo6g017000 Brassica oleracea Bo6g017000 N 0.000
Bo6g066940 Brassica oleracea Bo6g066940 N 0.000
Bo7g065570 Brassica oleracea Bo7g065570 N 0.000
Bo7g067460 Brassica oleracea Bo7g067460 N 0.000
Bo9g181220 Brassica oleracea Bo9g181220 N 0.000
Bostr.19424s0975 Boechera stricta Bostr.19424s0975 N 0.000
Bostr.29863s0004 Boechera stricta Bostr.29863s0004 N 0.000