POPTR_0009s01990 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0009s01990 T222537_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s01990.1 Homeodomain 26 85
POPTR_0009s01990.2 Homeodomain 26 85

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCPOG00000023252 Cavia porcellus ENSCPOG00000023252 I
ENSCSAG00000006035 Chlorocebus sabaeus ENSCSAG00000006035 I
ENSDORG00000002308 Dipodomys ordii ENSDORG00000002308 N
ENSMEUG00000011309 Macropus eugenii ENSMEUG00000011309 I
ENSMMUG00000031113 Macaca mulatta ENSMMUG00000031113 I
ENSMPUG00000000119 Mustela putorius furo ENSMPUG00000000119 I
ENSPPYG00000013323 Pongo abelii ENSPPYG00000013323 I
ENSSTOG00000025930 Ictidomys tridecemlineatus ENSSTOG00000025930 I
HES6 Bos taurus ENSBTAG00000009870 I
HES6 Homo sapiens ENSG00000144485 D
Hes6 Mus musculus ENSMUSG00000067071 I
HES6 Ochotona princeps ENSOPRG00000014855 I
HES6 Procavia capensis ENSPCAG00000017100 I
HES6 Pteropus vampyrus ENSPVAG00000005572 I
Hes6 Rattus norvegicus ENSRNOG00000020194 I
HES6 Sus scrofa ENSSSCG00000016342 I