Alligator_sinensis_CCG003634.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG003634.1 T225170_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003634.1 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_058_00064 Aquilegia coerulea Aquca_058_00064 N 0.000
cassava11920.valid.m1 Manihot esculenta cassava11920.valid.m1 N 0.000
Ca_02696 Cicer arietinum Ca_02696 N 0.000
chr3.CM0106.470.nd Lotus japonicus chr3.CM0106.470.nd N 0.000
Ciclev10020072m.g Citrus clementina Ciclev10020072m.g N 0.000
Cla007135 Citrullus lanatus Cla007135 N 0.000
Cucsa.362140 Cucumis sativus Cucsa.362140 N 0.000
Eucgr.A00109 Eucalyptus grandis Eucgr.A00109 N 0.000
evm.TU.supercontig_9.323 Carica papaya evm.TU.supercontig_9.323 N 0.000
GLYMA13G42100 Glycine max GLYMA13G42100 N 0.000
GLYMA15G03290 Glycine max GLYMA15G03290 N 0.000
Gorai.011G140100 Gossypium raimondii Gorai.011G140100 N 0.000
Gorai.011G140300 Gossypium raimondii Gorai.011G140300 N 0.000
mgf025327m Mimulus guttatus mgf025327m N 0.000
MTR_2g099110 Medicago truncatula MTR_2g099110 N 0.000
orange1.1g047247m.g Citrus sinensis orange1.1g047247m.g N 0.000
PK11022.1 Cannabis sativa PK11022.1 N 0.000
Pm007259 Prunus mume Pm007259 N 0.000
POPTR_0007s01650 Populus trichocarpa POPTR_0007s01650 N 0.000
POPTR_0017s05450 Populus trichocarpa POPTR_0017s05450 N 0.000
PRUPE_ppa1027119mg Prunus persica PRUPE_ppa1027119mg N 0.000
SapurV1A.0485s0200 Salix purpurea SapurV1A.0485s0200 N 0.000
SapurV1A.0791s0060 Salix purpurea SapurV1A.0791s0060 N 0.000
SapurV1A.0865s0070 Salix purpurea SapurV1A.0865s0070 N 0.000
SapurV1A.1272s0060 Salix purpurea SapurV1A.1272s0060 N 0.000
SapurV1A.1357s0040 Salix purpurea SapurV1A.1357s0040 N 0.000
Solyc08g014030.1 Solanum lycopersicum Solyc08g014030.1 N 0.000
TCM_019978 Theobroma cacao TCM_019978 N 0.000
VIT_00s0226g00070 Vitis vinifera VIT_00s0226g00070 N 0.000