Cflo_00678--XP_623764.2_APIME (Camponotus floridanus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cflo_00678--XP_623764.2_APIME T225488_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.867 0.965
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.867 0.965
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.867 0.965
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.867 0.965
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.867 0.947
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.867 0.947
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.867 0.947
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.867 0.947
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.867 0.947
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.965
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.865 0.947
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.865 0.947
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.865 0.947
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.865 0.947
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.947
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.865 0.947
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.859 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cflo_00678--XP_623764.2_APIME Homeodomain 148 204

Links

Other Homeodomain family TFs
Other Camponotus floridanus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N 0.000
Cmyd_10001989 Chelonia mydas Cmyd_10001989 N 0.000
Cmyd_10002130 Chelonia mydas Cmyd_10002130 N 0.000
Cmyd_10003172 Chelonia mydas Cmyd_10003172 N 0.000
Cmyd_10003232 Chelonia mydas Cmyd_10003232 N 0.000
Cmyd_10003439 Chelonia mydas Cmyd_10003439 N 0.000
Cmyd_10003504 Chelonia mydas Cmyd_10003504 N 0.000
Cmyd_10003654 Chelonia mydas Cmyd_10003654 N 0.000
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N 0.000
Cmyd_10004478 Chelonia mydas Cmyd_10004478 N 0.000
Cmyd_10004639 Chelonia mydas Cmyd_10004639 N 0.000
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N 0.000
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N 0.000
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N 0.000
Cmyd_10006722 Chelonia mydas Cmyd_10006722 N 0.000
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N 0.000
Cmyd_10007153 Chelonia mydas Cmyd_10007153 N 0.000
Cmyd_10007273 Chelonia mydas Cmyd_10007273 N 0.000
Cmyd_10007297 Chelonia mydas Cmyd_10007297 N 0.000
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N 0.000
Cmyd_10007900 Chelonia mydas Cmyd_10007900 N 0.000
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N 0.000
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N 0.000
Cmyd_10008649 Chelonia mydas Cmyd_10008649 N 0.000
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N 0.000
Cmyd_10009304 Chelonia mydas Cmyd_10009304 N 0.000
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N 0.000
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N 0.000
Cmyd_10009643 Chelonia mydas Cmyd_10009643 N 0.000
Cmyd_10011070 Chelonia mydas Cmyd_10011070 N 0.000
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N 0.000
Cmyd_10011536 Chelonia mydas Cmyd_10011536 N 0.000
Cmyd_10011918 Chelonia mydas Cmyd_10011918 N 0.000
Cmyd_10012049 Chelonia mydas Cmyd_10012049 N 0.000
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N 0.000
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N 0.000
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N 0.000
Cmyd_10012472 Chelonia mydas Cmyd_10012472 N 0.000
Cmyd_10012695 Chelonia mydas Cmyd_10012695 N 0.000
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N 0.000
Cmyd_10012830 Chelonia mydas Cmyd_10012830 N 0.000
Cmyd_10012986 Chelonia mydas Cmyd_10012986 N 0.000
Cmyd_10013046 Chelonia mydas Cmyd_10013046 N 0.000
Cmyd_10013772 Chelonia mydas Cmyd_10013772 N 0.000
Cmyd_10013937 Chelonia mydas Cmyd_10013937 N 0.000
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N 0.000
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N 0.000
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N 0.000
Cmyd_10015203 Chelonia mydas Cmyd_10015203 N 0.000
Cmyd_10015316 Chelonia mydas Cmyd_10015316 N 0.000
Cmyd_10016076 Chelonia mydas Cmyd_10016076 N 0.000
Cmyd_10016112 Chelonia mydas Cmyd_10016112 N 0.000
Cmyd_10016495 Chelonia mydas Cmyd_10016495 N 0.000
Cmyd_10016498 Chelonia mydas Cmyd_10016498 N 0.000
Cmyd_10016549 Chelonia mydas Cmyd_10016549 N 0.000
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N 0.000
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N 0.000
Cmyd_10017755 Chelonia mydas Cmyd_10017755 N 0.000
Cmyd_10017906 Chelonia mydas Cmyd_10017906 N 0.000
Cmyd_10017938 Chelonia mydas Cmyd_10017938 N 0.000
Cmyd_10018053 Chelonia mydas Cmyd_10018053 N 0.000