Gfo_R005354 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R005354 T226183_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FGRRES_07914
M02132_2.00 		Fusarium graminearum
NNKACATGTHN
NDACATGTMNN		 PBM
Weirauch et al.(2014)
pTH6329 		0.672 0.460
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R005354 Homeodomain 2 54

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.000
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.000
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.000
Bo1g141120 Brassica oleracea Bo1g141120 I 0.000
Bo3g018460 Brassica oleracea Bo3g018460 I 0.000
Bo5g136680 Brassica oleracea Bo5g136680 I 0.000
Bo9g176900 Brassica oleracea Bo9g176900 I 0.000
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.000
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.000
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.000
Bra002610 Brassica rapa Bra002610 I 0.000
Bra006741 Brassica rapa Bra006741 I 0.000
Bra009134 Brassica rapa Bra009134 I 0.000
Bra034173 Brassica rapa Bra034173 I 0.000
Bra034853 Brassica rapa Bra034853 I 0.000
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.000
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.000
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.000
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.000
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.000
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.000
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.000
Ca_12513 Cicer arietinum Ca_12513 I 0.000
Ca_14247 Cicer arietinum Ca_14247 I 0.000
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.000
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.000
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.000
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.000
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.000
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.000
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.000
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.000
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.000
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.000
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.000
mgf010347m Mimulus guttatus mgf010347m I 0.000
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.000
Pm000529 Prunus mume Pm000529 I 0.000
Pm018878 Prunus mume Pm018878 I 0.000
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.000
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.000
TCM_042604 Theobroma cacao TCM_042604 I 0.000
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.000
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.000