Sakowv30037695m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30037695m.g T227969_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ceh-36
M00673_2.00 		Caenorhabditis elegans
NWAATCYN
NRGATTWN		 PBM
Narasimhan et al.(2015)
pTH10730 		0.653 0.474
ceh-53
M00679_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10699 		0.636 0.491
NEMVEDRAFT_v1g113057
M02144_2.00 		Nematostella vectensis
NYTAATCCBN
NVGGATTARN		 PBM
Weirauch et al.(2014)
pTH6135 		0.636 0.474
Dmbx1
M00441_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Dmbx1_2277 		0.631 0.474
DMBX1
M03236_2.00 		Homo sapiens
NHTAATCCBN
NVGGATTADN		 SELEX
Jolma et al.(2013)
DMBX1_1 		0.631 0.474
DMBX1
M05383_2.00 		Homo sapiens
NTAATCSN
NSGATTAN		 SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX 		0.631 0.474
DMBX1
M05384_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX 		0.631 0.474
ceh-37
M00674_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10716 		0.629 0.456
CRX
M00274_2.00 		Homo sapiens
NMTAATCCSN
NSGGATTAKN		 PBM
Barrera et al.(2016)
CRX_REF 		0.629 0.439
Crx
M00489_2.00 		Mus musculus
NWAAKMBN
NVKMTTWN		 PBM
Berger et al.(2008)
Crx_3485 		0.629 0.439
CRX
M04949_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX 		0.629 0.439
Crx
M08139_2.00 		Mus musculus
YTAATCCYCYY
RRGRGGATTAR		 ChIP-seq
Mathelier et al.(2014)
MA0467.1 		0.629 0.439
CRX
M09132_2.00 		Homo sapiens
BYTAATCCBHYYN
NRRDVGGATTARV		 Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B 		0.629 0.439
Crx
M09208_2.00 		Mus musculus
BYTAATCCBHYYN
NRRDVGGATTARV		 Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A 		0.629 0.439
Crx
M09577_2.00 		Mus musculus
NYTAATCC
GGATTARN		 Misc
Heinz et al.(2010)
Retina-Crx_GSE20012 		0.629 0.439
CRX
M10647_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CRX_Q4_01 		0.629 0.439
CRX
M10648_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CRX_Q4_02 		0.629 0.439
CRX
M00270_2.00 		Homo sapiens
NWDAKNN
NNMTHWN		 PBM
Barrera et al.(2016)
CRX_E80A 		0.629 0.439
CRX
M00271_2.00 		Homo sapiens
NHDAKNN
NNMTHDN		 PBM
Barrera et al.(2016)
CRX_R41Q 		0.629 0.439
CRX
M00272_2.00 		Homo sapiens
NNHNATNN
NNATNDNN		 PBM
Barrera et al.(2016)
CRX_R41W 		0.629 0.439
CRX
M00275_2.00 		Homo sapiens
NMTAATCCSN
NSGGATTAKN		 PBM
Barrera et al.(2016)
CRX_V66I 		0.629 0.439
CRX
M04950_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX 		0.629 0.439
Otx1
M00396_2.00 		Mus musculus
NTAAKCYN
NRGMTTAN		 PBM
Berger et al.(2008)
Otx1_2325 		0.623 0.421
Otx2
M00418_2.00 		Mus musculus
NTAAKMBN
NVKMTTAN		 PBM
Berger et al.(2008)
Otx2_3441 		0.623 0.421
OTX1
M03116_2.00 		Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
OTX1_1 		0.623 0.421
OTX1
M03117_2.00 		Homo sapiens
NTAATCSB
VSGATTAN		 SELEX
Jolma et al.(2013)
OTX1_2 		0.623 0.421
OTX2
M03197_2.00 		Homo sapiens
NHTAAKCGGATTANN
NNTAATCCGMTTADN		 SELEX
Jolma et al.(2013)
OTX2_1 		0.623 0.421
OTX2
M03198_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Jolma et al.(2013)
OTX2_2 		0.623 0.421
Otx1
M03249_2.00 		Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
Otx1_1 		0.623 0.421
Otx1
M03250_2.00 		Mus musculus
NTAATCCN
NGGATTAN		 SELEX
Jolma et al.(2013)
Otx1_2 		0.623 0.421
oc
M03808_2.00 		Drosophila melanogaster
HTAATCCB
VGGATTAD		 SELEX
Nitta et al.(2015)
oc_1 		0.623 0.421
OTX1
M05022_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX 		0.623 0.421
OTX1
M05024_2.00 		Homo sapiens
NTAATCCNNN
NNNGGATTAN		 SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX 		0.623 0.421
OTX2
M05251_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX 		0.623 0.421
oc
M06502_2.00 		Drosophila melanogaster
TAATCC
GGATTA		 B1H
Mathelier et al.(2014)
MA0234.1 		0.623 0.421
oc
M06282_2.00 		Drosophila melanogaster
WTAATCC
GGATTAW		 B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102 		0.623 0.421
oc
M06283_2.00 		Drosophila melanogaster
NTAATCCB
VGGATTAN		 B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102 		0.623 0.421
OTX2
M09153_2.00 		Homo sapiens
BYTAATCCYYN
NRRGGATTARV		 Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A 		0.623 0.421
Otx2
M09183_2.00 		Mus musculus
HTAATCCYNYNN
NNRNRGGATTAD		 Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A 		0.623 0.421
Otx2
M09569_2.00 		Mus musculus
NHTAATCCHB
VDGGATTADN		 Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098 		0.623 0.421
oc
M09681_2.00 		Drosophila melanogaster
HTAATCCN
NGGATTAD		 Misc
Kulakovskiy et al.(2009)
oc 		0.623 0.421
OTX1
M10673_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX1_Q5 		0.623 0.421
OTX2
M10727_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX2_Q3_01 		0.623 0.421
OTX2
M10728_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX2_Q3 		0.623 0.421
OTX1
M05023_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX 		0.623 0.421
OTX1
M05025_2.00 		Homo sapiens
HTAATCCNHN
NDNGGATTAD		 SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX 		0.623 0.421
OTX2
M05252_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX 		0.623 0.421
CRX
M00273_2.00 		Homo sapiens
NNYTAATCCVN
NBGGATTARNN		 PBM
Barrera et al.(2016)
CRX_R90W 		0.619 0.421
Gsc
M00411_2.00 		Mus musculus
NNTAATYBN
NVRATTANN		 PBM
Berger et al.(2008)
Gsc_2327 		0.614 0.439
GSC
M03146_2.00 		Homo sapiens
NHTAATCCNH
DNGGATTADN		 SELEX
Jolma et al.(2013)
GSC_1 		0.614 0.439
GSC
M05134_2.00 		Homo sapiens
NTAATCCB
VGGATTAN		 SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX 		0.614 0.439
GSC
M05136_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX 		0.614 0.439
gsc
M09584_2.00 		Xenopus tropicalis
NTAATCYN
NRGATTAN		 Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576 		0.614 0.439
GSC
M05135_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX 		0.614 0.439
GSC
M05137_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX 		0.614 0.439
HBX4_ECHGR
M02195_2.00 		Echinococcus granulosus
NHTAATCYNN
NNRGATTADN		 PBM
Weirauch et al.(2014)
pTH6301 		0.607 0.421
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23943699_peptide Homeodomain 72 128

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

668 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008807 Ricinus communis 30128.m008807 N
AMTR_s00057p00206860 Amborella trichopoda AMTR_s00057p00206860 N
Aquca_016_00289 Aquilegia coerulea Aquca_016_00289 N
AT1G09060 Arabidopsis thaliana AT1G09060 N
Bo8g058150 Brassica oleracea Bo8g058150 N
Bostr.25219s0040 Boechera stricta Bostr.25219s0040 N
Bra030754 Brassica rapa Bra030754 N
BRADI1G62640 Brachypodium distachyon BRADI1G62640 N
Cagra.4395s0091 Capsella grandiflora Cagra.4395s0091 N
Carubv10011895m.g Capsella rubella Carubv10011895m.g N
cassava22130.valid.m1 Manihot esculenta cassava22130.valid.m1 N
Ca_03676 Cicer arietinum Ca_03676 N
chr5.CM0299.460.nd Lotus japonicus chr5.CM0299.460.nd N
Ciclev10000178m.g Citrus clementina Ciclev10000178m.g N
Cucsa.091190 Cucumis sativus Cucsa.091190 N
Eucgr.B01932 Eucalyptus grandis Eucgr.B01932 N
evm.TU.supercontig_48.77 Carica papaya evm.TU.supercontig_48.77 N
F775_27911 Aegilops tauschii F775_27911 N
fgenesh2_kg.1__941__AT1G09060.2 Arabidopsis lyrata fgenesh2_kg.1__941__AT1G09060.2 N
gene22503-v1.0-hybrid Fragaria vesca gene22503-v1.0-hybrid N
GLYMA10G29371 Glycine max GLYMA10G29371 N
Gorai.004G240400 Gossypium raimondii Gorai.004G240400 N
GRMZM2G428933 Zea mays GRMZM2G428933 N
LPERR03G14970 Leersia perrieri LPERR03G14970 N
Lus10017092.g Linum usitatissimum Lus10017092.g N
Lus10037812.g Linum usitatissimum Lus10037812.g N
mgf016253m Mimulus guttatus mgf016253m N
MLOC_15207 Hordeum vulgare MLOC_15207 N
MTR_1g083120 Medicago truncatula MTR_1g083120 N
OGLUM03G17600 Oryza glumaepatula OGLUM03G17600 N
OMERI03G15300 Oryza meridionalis OMERI03G15300 N
ONIVA03G18210 Oryza nivara ONIVA03G18210 N
orange1.1g002177m.g Citrus sinensis orange1.1g002177m.g N
ORGLA03G0163900 Oryza glaberrima ORGLA03G0163900 N
ORUFI03G17780 Oryza rufipogon ORUFI03G17780 N
OS03G0346700 Oryza sativa OS03G0346700 N
Pavir.J33002 Panicum virgatum Pavir.J33002 N
PDK_20s1361681g001 Phoenix dactylifera PDK_20s1361681g001 N
PGSC0003DMG400022424 Solanum tuberosum PGSC0003DMG400022424 N
PK22697.1 Cannabis sativa PK22697.1 N
Pm003293 Prunus mume Pm003293 N
POPTR_0005s02710 Populus trichocarpa POPTR_0005s02710 N
POPTR_0013s01970 Populus trichocarpa POPTR_0013s01970 N
PRUPE_ppa020523mg Prunus persica PRUPE_ppa020523mg N
SapurV1A.0066s0380 Salix purpurea SapurV1A.0066s0380 N
SapurV1A.0424s0260 Salix purpurea SapurV1A.0424s0260 N
Sb01g035540 Sorghum bicolor Sb01g035540 N
Si034162m.g Setaria italica Si034162m.g N
Solyc02g078790.2 Solanum lycopersicum Solyc02g078790.2 N
TCM_026634 Theobroma cacao TCM_026634 N
Thhalv10006723m.g Eutrema salsugineum Thhalv10006723m.g N
Traes_4AS_93108583B Triticum aestivum Traes_4AS_93108583B N
Traes_4BS_BDBC1B1FA Triticum aestivum Traes_4BS_BDBC1B1FA N
Traes_4DL_E88B8B0F6 Triticum aestivum Traes_4DL_E88B8B0F6 N
TRIUR3_21153 Triticum urartu TRIUR3_21153 N
VIT_14s0060g02420 Vitis vinifera VIT_14s0060g02420 N