Cagra.2097s0014 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.2097s0014 T228224_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.689 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2097s0014.1.p Homeodomain 52 113

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAB39329 Xenopus laevis AAB39329 I 0.000
AAEL005513 Aedes aegypti AAEL005513 I 0.000
AALB000402 Anopheles albimanus AALB000402 I 0.000
Aan_R002236 Calypte anna Aan_R002236 I 0.000
Aan_R005227 Calypte anna Aan_R005227 I 0.000
Aan_R005610 Calypte anna Aan_R005610 I 0.000
AARA011030 Anopheles arabiensis AARA011030 I 0.000
AATE020501 Anopheles atroparvus AATE020501 I 0.000
ACEP23519 Atta cephalotes ACEP23519 I 0.000
ACEP23524 Atta cephalotes ACEP23524 I 0.000
ACHR005633 Anopheles christyi ACHR005633 I 0.000
ACUA017601 Anopheles culicifacies ACUA017601 I 0.000
ACUA022001 Anopheles culicifacies ACUA022001 I 0.000
ADAC002355 Anopheles darlingi ADAC002355 I 0.000
ADIR005117 Anopheles dirus ADIR005117 I 0.000
ADIR010877 Anopheles dirus ADIR010877 I 0.000
AEPI001857 Anopheles epiroticus AEPI001857 I 0.000
Afo_R003117 Aptenodytes forsteri Afo_R003117 I 0.000
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 0.000
AFUN010580 Anopheles funestus AFUN010580 I 0.000
AGAP008551 Anopheles gambiae AGAP008551 I 0.000
Alligator_sinensis_CCG004626.1 Alligator sinensis Alligator_sinensis_CCG004626.1 I 0.000
Alligator_sinensis_CCG012577.1 Alligator sinensis Alligator_sinensis_CCG012577.1 I 0.000
AMAM023956 Anopheles maculatus AMAM023956 I 0.000
AMEC005585 Anopheles melas AMEC005585 I 0.000
AMEM004022 Anopheles merus AMEM004022 N 0.000
AMEM010864 Anopheles merus AMEM010864 I 0.000
AMIN001006 Anopheles minimus AMIN001006 I 0.000
Aqu1.222022 Amphimedon queenslandica Aqu1.222022 I 0.000
AQUA000239 Anopheles quadriannulatus AQUA000239 I 0.000
ASTEI05192 Anopheles stephensi ASTEI05192 I 0.000
BGIBMGA010481 Bombyx mori BGIBMGA010481 I 0.000
BGLB001215 Biomphalaria glabrata BGLB001215 I 0.000
BGLB010651 Biomphalaria glabrata BGLB010651 I 0.000
Brh_R001114 Buceros rhinoceros Brh_R001114 I 0.000
Brh_R001115 Buceros rhinoceros Brh_R001115 I 0.000
Brh_R009512 Buceros rhinoceros Brh_R009512 I 0.000
CapteG167863 Capitella teleta CapteG167863 I 0.000
Cflo_02382--XP_392819.2_APIME Camponotus floridanus Cflo_02382--XP_392819.2_APIME I 0.000
CGI_10014747 Crassostrea gigas CGI_10014747 I 0.000
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.000
CLEC004107 Cimex lectularius CLEC004107 I 0.000
Cmyd_10013581 Chelonia mydas Cmyd_10013581 I 0.000
CPIJ000420 Culex quinquefasciatus CPIJ000420 I 0.000
CpipJ_CPIJ000420 Culex pipiens CpipJ_CPIJ000420 I 0.000
CpipJ_CPIJ018354 Culex pipiens CpipJ_CPIJ018354 I 0.000
D917_04509 Trichinella nativa D917_04509 I 0.000
D918_06928 Trichuris suis D918_06928 I 0.000
D918_09504 Trichuris suis D918_09504 I 0.000
DAPPUDRAFT_300607 Daphnia pulex DAPPUDRAFT_300607 I 0.000
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I 0.000
EFV60166 Trichinella spiralis EFV60166 I 0.000
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I 0.000
ENSAMEG00000014442 Ailuropoda melanoleuca ENSAMEG00000014442 I 0.000
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 0.000
ENSAMXG00000010992 Astyanax mexicanus ENSAMXG00000010992 I 0.000
ENSAMXG00000016178 Astyanax mexicanus ENSAMXG00000016178 I 0.000
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I 0.000
ENSAPLG00000007006 Anas platyrhynchos ENSAPLG00000007006 I 0.000
ENSAPLG00000009135 Anas platyrhynchos ENSAPLG00000009135 I 0.000
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I 0.000
ENSBTAP00000003668-D4 Bos grunniens ENSBTAP00000003668-D4 I 0.000
ENSBTAP00000029021-D3 Bos grunniens ENSBTAP00000029021-D3 I 0.000
ENSCING00000006188 Ciona intestinalis ENSCING00000006188 I 0.000
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 0.000
ENSCSAG00000017872 Chlorocebus sabaeus ENSCSAG00000017872 I 0.000
ENSCSAVG00000004749 Ciona savignyi ENSCSAVG00000004749 I 0.000
ENSETEG00000017446 Echinops telfairi ENSETEG00000017446 I 0.000
ENSFALG00000008280 Ficedula albicollis ENSFALG00000008280 I 0.000
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 0.000
ENSGACG00000017820 Gasterosteus aculeatus ENSGACG00000017820 I 0.000
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 0.000
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 0.000
ENSGMOG00000001314 Gadus morhua ENSGMOG00000001314 I 0.000
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.000
ENSLACG00000007324 Latimeria chalumnae ENSLACG00000007324 I 0.000
ENSLACG00000010552 Latimeria chalumnae ENSLACG00000010552 I 0.000
ENSLACG00000011178 Latimeria chalumnae ENSLACG00000011178 I 0.000
ENSLOCG00000008877 Lepisosteus oculatus ENSLOCG00000008877 I 0.000
ENSLOCG00000011514 Lepisosteus oculatus ENSLOCG00000011514 I 0.000
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 0.000
ENSMEUG00000007556 Macropus eugenii ENSMEUG00000007556 I 0.000
ENSMEUG00000016668 Macropus eugenii ENSMEUG00000016668 I 0.000
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 0.000
ENSMPUG00000001838 Mustela putorius furo ENSMPUG00000001838 I 0.000
ENSNLEG00000001639 Nomascus leucogenys ENSNLEG00000001639 I 0.000
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I 0.000
ENSOARG00000018267 Ovis aries ENSOARG00000018267 I 0.000
ENSOARG00000018276 Ovis aries ENSOARG00000018276 I 0.000
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 0.000
ENSONIG00000012614 Oreochromis niloticus ENSONIG00000012614 I 0.000
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 0.000
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.000
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 0.000
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 0.000
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I 0.000
ENSP00000382216 Macaca fascicularis ENSP00000382216 I 0.000
ENSPANG00000014460 Papio anubis ENSPANG00000014460 I 0.000
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 0.000
ENSPFOG00000002285 Poecilia formosa ENSPFOG00000002285 I 0.000
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I 0.000
ENSPFOG00000005752 Poecilia formosa ENSPFOG00000005752 I 0.000
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 0.000
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I 0.000
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I 0.000
ENSPMAG00000004234 Petromyzon marinus ENSPMAG00000004234 I 0.000
ENSPMAG00000009833 Petromyzon marinus ENSPMAG00000009833 I 0.000
ENSPPYG00000005285 Pongo abelii ENSPPYG00000005285 I 0.000
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I 0.000
ENSPSIG00000002483 Pelodiscus sinensis ENSPSIG00000002483 I 0.000
ENSPSIG00000010579 Pelodiscus sinensis ENSPSIG00000010579 I 0.000
ENSSHAG00000001186 Sarcophilus harrisii ENSSHAG00000001186 I 0.000
ENSSHAG00000012543 Sarcophilus harrisii ENSSHAG00000012543 I 0.000
ENSSTOG00000003788 Ictidomys tridecemlineatus ENSSTOG00000003788 I 0.000
ENSSTOG00000007103 Ictidomys tridecemlineatus ENSSTOG00000007103 I 0.000
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I 0.000
ENSSTOG00000010836 Ictidomys tridecemlineatus ENSSTOG00000010836 I 0.000
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.000
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I 0.000
ENSTRUG00000002512 Takifugu rubripes ENSTRUG00000002512 I 0.000
ENSTSYG00000005021 Tarsius syrichta ENSTSYG00000005021 I 0.000
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.000
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I 0.000
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 0.000
ENSXMAG00000016280 Xiphophorus maculatus ENSXMAG00000016280 I 0.000
estExt_fgenesh2_pg.C_1720042 Branchiostoma floridae estExt_fgenesh2_pg.C_1720042 I 0.000
estExt_gwp.C_540260 Branchiostoma floridae estExt_gwp.C_540260 I 0.000
GA28973 Drosophila pseudoobscura FBgn0250331 I 0.000
GB42213 Apis mellifera GB42213 N 0.000
GB44177 Apis mellifera GB44177 I 0.000
GD22774 Drosophila simulans FBgn0194168 I 0.000
GE14935 Drosophila yakuba FBgn0232525 I 0.000
GF20577 Drosophila ananassae FBgn0097583 I 0.000
Gfo_R000026 Geospiza fortis Gfo_R000026 I 0.000
Gfo_R005758 Geospiza fortis Gfo_R005758 I 0.000
Gfo_R005908 Geospiza fortis Gfo_R005908 I 0.000
Gfo_R012055 Geospiza fortis Gfo_R012055 I 0.000
GG24457 Drosophila erecta FBgn0116589 I 0.000
GH10284 Drosophila grimshawi FBgn0117765 I 0.000
GI17981 Drosophila mojavensis FBgn0140721 I 0.000
GJ19553 Drosophila virilis FBgn0206695 I 0.000
GK18268 Drosophila willistoni FBgn0220267 I 0.000
GL26531 Drosophila persimilis FBgn0164113 I 0.000
GM18164 Drosophila sechellia FBgn0173071 I 0.000
HelroG185435 Helobdella robusta HelroG185435 I 0.000
HelroG186716 Helobdella robusta HelroG186716 I 0.000
HHAL000023-PA Halyomorpha halys HHAL000023-PA I 0.000
HMEL009295 Heliconius melpomene HMEL009295 I 0.000
Hsal_07345--XP_392819.2_APIME Harpegnathos saltator Hsal_07345--XP_392819.2_APIME I 0.000
ISCW001846 Ixodes scapularis ISCW001846 I 0.000
ISCW010869 Ixodes scapularis ISCW010869 I 0.000
KGM_04785 Danaus plexippus KGM_04785 I 0.000
L798_14024 Zootermopsis nevadensis L798_14024 I 0.000
LCUP000453 Lucilia cuprina LCUP000453 I 0.000
LDEC015977 Leptinotarsa decemlineata LDEC015977 I 0.000
LLOJ009024 Lutzomyia longipalpis LLOJ009024 I 0.000
LOC103691556 Rattus norvegicus ENSRNOG00000058416 I 0.000
LotgiG104873 Lottia gigantea LotgiG104873 I 0.000
LotgiG189014 Lottia gigantea LotgiG189014 I 0.000
Mad Drosophila melanogaster FBgn0011648 D 0.000
MDOA012257 Musca domestica MDOA012257 I 0.000
MDOA015236 Musca domestica MDOA015236 I 0.000
ML011743a Mnemiopsis leidyi ML011743a I 0.000
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I 0.000
Myotis_brandtii_SMAD9_10010468 Myotis brandtii Myotis_brandtii_SMAD9_10010468 I 0.000
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.000
NEMVEDRAFT_v1g228395 Nematostella vectensis NEMVEDRAFT_v1g228395 I 0.000
NV10880 Nasonia vitripennis NV10880 I 0.000
NV13248 Nasonia vitripennis NV13248 I 0.000
NV15769 Nasonia vitripennis NV15769 I 0.000
Ocbimv22002448m.g Octopus bimaculoides Ocbimv22002448m.g I 0.000
Ocbimv22036741m.g Octopus bimaculoides Ocbimv22036741m.g I 0.000
Ogr07749 Ophisaurus gracilis Ogr07749 I 0.000
Ogr07750 Ophisaurus gracilis Ogr07750 I 0.000
Ogr17529 Ophisaurus gracilis Ogr17529 I 0.000
PHUM033930 Pediculus humanus PHUM033930 I 0.000
PPAI005080 Phlebotomus papatasi PPAI005080 I 0.000
PPAI007902 Phlebotomus papatasi PPAI007902 I 0.000
Pvit_04328 Pogona vitticeps Pvit_04328 I 0.000
Pvit_04529 Pogona vitticeps Pvit_04529 I 0.000
Sakowv30001252m.g Saccoglossus kowalevskii Sakowv30001252m.g I 0.000
Sakowv30032201m.g Saccoglossus kowalevskii Sakowv30032201m.g I 0.000
Sakowv30032220m.g Saccoglossus kowalevskii Sakowv30032220m.g I 0.000
SINV11024 Solenopsis invicta SINV11024 I 0.000
SINV22770 Solenopsis invicta SINV22770 I 0.000
SINV22799 Solenopsis invicta SINV22799 I 0.000
SMAD1 Homo sapiens ENSG00000170365 D 0.000
SMAD1 Ochotona princeps ENSOPRG00000012775 I 0.000
smad1 Xenopus tropicalis XB-GENE-1018193 I 0.000
smad1.L Xenopus laevis XB-GENE-1018199 I 0.000
smad1.S Xenopus laevis XB-GENE-6253892 I 0.000
SMAD2 Microcebus murinus ENSMICG00000007882 I 0.000
SMAD2 Sorex araneus ENSSARG00000003487 I 0.000
smad2.S Xenopus laevis XB-GENE-864923 I 0.000
SMAD3 Bos taurus ENSBTAG00000012599 I 0.000
SMAD3 Canis familiaris ENSCAFG00000017388 I 0.000
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I 0.000
SMAD3 Callithrix jacchus ENSCJAG00000002088 I 0.000
SMAD3 Cavia porcellus ENSCPOG00000021314 I 0.000
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I 0.000
SMAD3 Equus caballus ENSECAG00000020259 I 0.000
SMAD3 Echinops telfairi ENSETEG00000003356 I 0.000
SMAD3 Felis catus ENSFCAG00000027081 I 0.000
SMAD3 Homo sapiens ENSG00000166949 D 0.000
SMAD3 Gasterosteus aculeatus ENSGACG00000016882 I 0.000
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 0.000
SMAD3 Microcebus murinus ENSMICG00000006119 I 0.000
SMAD3 Macaca mulatta ENSMMUG00000015455 I 0.000
SMAD3 Monodelphis domestica ENSMODG00000009609 I 0.000
Smad3 Mus musculus ENSMUSG00000032402 D 0.000
SMAD3 Otolemur garnettii ENSOGAG00000014217 I 0.000
SMAD3 Ochotona princeps ENSOPRG00000014996 I 0.000
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.000
SMAD3 Pan troglodytes ENSPTRG00000007199 I 0.000
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I 0.000
Smad3 Rattus norvegicus ENSRNOG00000008620 I 0.000
SMAD3 Taeniopygia guttata ENSTGUG00000009470 I 0.000
smad3 Xenopus tropicalis XB-GENE-481992 I 0.000
smad3.L Xenopus laevis XB-GENE-864816 I 0.000
smad3a Danio rerio ENSDARG00000036096 I 0.000
smad3a Oryzias latipes ENSORLG00000002207 I 0.000
smad3a Takifugu rubripes ENSTRUG00000016858 I 0.000
smad3b Danio rerio ENSDARG00000010207 I 0.000
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 0.000
smad3b Oryzias latipes ENSORLG00000006803 I 0.000
smad3b Tetraodon nigroviridis ENSTNIG00000008432 I 0.000
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.000
smad5 Danio rerio ENSDARG00000037238 I 0.000
Smad5 Dipodomys ordii ENSDORG00000004533 I 0.000
smad5 Gasterosteus aculeatus ENSGACG00000018718 I 0.000
smad5 Tetraodon nigroviridis ENSTNIG00000003701 I 0.000
smad5 Takifugu rubripes ENSTRUG00000001329 I 0.000
SMAD9 Anolis carolinensis ENSACAG00000004463 I 0.000
SMAD9 Bos taurus ENSBTAG00000007589 I 0.000
SMAD9 Canis familiaris ENSCAFG00000006162 I 0.000
SMAD9 Cavia porcellus ENSCPOG00000010255 I 0.000
smad9 Danio rerio ENSDARG00000021938 I 0.000
SMAD9 Dasypus novemcinctus ENSDNOG00000048385 I 0.000
Smad9 Dipodomys ordii ENSDORG00000002526 I 0.000
SMAD9 Equus caballus ENSECAG00000012534 I 0.000
SMAD9 Echinops telfairi ENSETEG00000020236 I 0.000
SMAD9 Felis catus ENSFCAG00000003813 I 0.000
SMAD9 Homo sapiens ENSG00000120693 D 0.000
SMAD9 Gallus gallus ENSGALG00000017050 I 0.000
SMAD9 Gorilla gorilla ENSGGOG00000001017 I 0.000
SMAD9 Loxodonta africana ENSLAFG00000002903 I 0.000
SMAD9 Meleagris gallopavo ENSMGAG00000015060 I 0.000
SMAD9 Microcebus murinus ENSMICG00000003343 I 0.000
SMAD9 Myotis lucifugus ENSMLUG00000006399 I 0.000
SMAD9 Macaca mulatta ENSMMUG00000009914 I 0.000
SMAD9 Monodelphis domestica ENSMODG00000010017 I 0.000
Smad9 Mus musculus ENSMUSG00000027796 D 0.000
SMAD9 Ornithorhynchus anatinus ENSOANG00000015497 I 0.000
SMAD9 Oryctolagus cuniculus ENSOCUG00000007453 I 0.000
SMAD9 Otolemur garnettii ENSOGAG00000002742 I 0.000
SMAD9 Ochotona princeps ENSOPRG00000004923 I 0.000
SMAD9 Procavia capensis ENSPCAG00000002604 I 0.000
SMAD9 Pan troglodytes ENSPTRG00000005788 I 0.000
SMAD9 Pteropus vampyrus ENSPVAG00000013871 I 0.000
Smad9 Rattus norvegicus ENSRNOG00000000091 D 0.000
SMAD9 Sorex araneus ENSSARG00000011878 I 0.000
SMAD9 Sus scrofa ENSSSCG00000009357 I 0.000
SMAD9 Tupaia belangeri ENSTBEG00000011491 I 0.000
SMAD9 Taeniopygia guttata ENSTGUG00000011897 I 0.000
smad9 Tetraodon nigroviridis ENSTNIG00000009925 I 0.000
smad9 Takifugu rubripes ENSTRUG00000001196 I 0.000
SMAD9 Tursiops truncatus ENSTTRG00000007903 I 0.000
SMAR008230 Strigamia maritima SMAR008230 I 0.000
SMAR012602 Strigamia maritima SMAR012602 I 0.000
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I 0.000
SPU_020722 Strongylocentrotus purpuratus SPU_020722 I 0.000
SPU_023107 Strongylocentrotus purpuratus SPU_023107 I 0.000
Tal_R000062 Tyto alba Tal_R000062 I 0.000
Tal_R001210 Tyto alba Tal_R001210 I 0.000
Tal_R004657 Tyto alba Tal_R004657 I 0.000
Tal_R011237 Tyto alba Tal_R011237 I 0.000
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I 0.000
TMUE_s0173000400 Trichuris muris TMUE_s0173000400 I 0.000
TriadG49742 Trichoplax adhaerens TriadG49742 I 0.000
TriadG50301 Trichoplax adhaerens TriadG50301 I 0.000
TTRE_0000192701 Trichuris trichiura TTRE_0000192701 I 0.000
TTRE_0000645601 Trichuris trichiura TTRE_0000645601 I 0.000
XP_002157279.1 Hydra magnipapillata XP_002157279.1 I 0.000
XP_002160208.1 Hydra magnipapillata XP_002160208.1 I 0.000