XP_002941818 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XP_002941818 T230764_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.835 0.982
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.912
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.912
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.912
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.912
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.877
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.877
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.877
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.877
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.877
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.877
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002941818 Homeodomain 142 201

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R009325 Aptenodytes forsteri Afo_R009325 N 0.000
Alligator_sinensis_CCG003694.1 Alligator sinensis Alligator_sinensis_CCG003694.1 N 0.000
Brh_R007854 Buceros rhinoceros Brh_R007854 N 0.000
Cmyd_10010411 Chelonia mydas Cmyd_10010411 N 0.000
ENSAMEG00000010206 Ailuropoda melanoleuca ENSAMEG00000010206 N 0.000
ENSAPLG00000013214 Anas platyrhynchos ENSAPLG00000013214 N 0.000
ENSCSAG00000018244 Chlorocebus sabaeus ENSCSAG00000018244 N 0.000
ENSFALG00000013343 Ficedula albicollis ENSFALG00000013343 N 0.000
ENSGALG00000012657 Gallus gallus ENSGALG00000012657 N 0.000
ENSGMOG00000006649 Gadus morhua ENSGMOG00000006649 N 0.000
ENSLOCG00000007283 Lepisosteus oculatus ENSLOCG00000007283 N 0.000
ENSLOCG00000007831 Lepisosteus oculatus ENSLOCG00000007831 N 0.000
ENSMPUG00000016646 Mustela putorius furo ENSMPUG00000016646 N 0.000
ENSNLEG00000008217 Nomascus leucogenys ENSNLEG00000008217 N 0.000
ENSOARG00000004353 Ovis aries ENSOARG00000004353 N 0.000
ENSOARG00000017583 Ovis aries ENSOARG00000017583 N 0.000
ENSONIG00000002831 Oreochromis niloticus ENSONIG00000002831 N 0.000
ENSONIG00000007305 Oreochromis niloticus ENSONIG00000007305 N 0.000
ENSP00000299466-D1 Bos grunniens ENSP00000299466-D1 N 0.000
ENSPANG00000006485 Papio anubis ENSPANG00000006485 N 0.000
ENSPFOG00000015799 Poecilia formosa ENSPFOG00000015799 N 0.000
ENSPFOG00000019127 Poecilia formosa ENSPFOG00000019127 N 0.000
ENSPPYG00000009253 Pongo abelii ENSPPYG00000009253 N 0.000
ENSPSIG00000008556 Pelodiscus sinensis ENSPSIG00000008556 N 0.000
ENSSHAG00000015872 Sarcophilus harrisii ENSSHAG00000015872 N 0.000
ENSSTOG00000004145 Ictidomys tridecemlineatus ENSSTOG00000004145 N 0.000
ENSXMAG00000009081 Xiphophorus maculatus ENSXMAG00000009081 N 0.000
ENSXMAG00000016273 Xiphophorus maculatus ENSXMAG00000016273 N 0.000
Gfo_R000617 Geospiza fortis Gfo_R000617 N 0.000
Myotis_brandtii_Sall3_10034211 Myotis brandtii Myotis_brandtii_Sall3_10034211 N 0.000
Ogr15828 Ophisaurus gracilis Ogr15828 N 0.000
Pvit_05136 Pogona vitticeps Pvit_05136 N 0.000
SALL1 Otolemur garnettii ENSOGAG00000027316 N 0.000
Sall1 Rattus norvegicus ENSRNOG00000013907 N 0.000
SALL1 Ornithorhynchus anatinus ENSOANG00000013399 N 0.000
sall1 Xenopus tropicalis XB-GENE-491393 N 0.000
sall1.L Xenopus laevis XB-GENE-866060 N 0.000
sall1a Takifugu rubripes ENSTRUG00000008950 N 0.000
sall1a Oryzias latipes ENSORLG00000013827 N 0.000
sall1a Tetraodon nigroviridis ENSTNIG00000004257 N 0.000
sall1a Gasterosteus aculeatus ENSGACG00000016702 N 0.000
SALL3 Tursiops truncatus ENSTTRG00000004958 N 0.000
SALL3 Pan troglodytes ENSPTRG00000010126 N 0.000
SALL3 Cavia porcellus ENSCPOG00000008546 N 0.000
SALL3 Callithrix jacchus ENSCJAG00000007332 N 0.000
SALL3 Canis familiaris ENSCAFG00000000013 N 0.000
SALL3 Sus scrofa ENSSSCG00000004858 N 0.000
SALL3 Loxodonta africana ENSLAFG00000013521 N 0.000
SALL3 Meleagris gallopavo ENSMGAG00000002297 N 0.000
SALL3 Myotis lucifugus ENSMLUG00000010582 N 0.000
SALL3 Macaca mulatta ENSMMUG00000000286 N 0.000
SALL3 Monodelphis domestica ENSMODG00000012231 N 0.000
SALL3 Homo sapiens ENSG00000256463 N 0.000
Sall3 Mus musculus ENSMUSG00000024565 N 0.000
SALL3 Equus caballus ENSECAG00000015414 N 0.000
Sall3 Dipodomys ordii ENSDORG00000002702 N 0.000
SALL3 Dasypus novemcinctus ENSDNOG00000025483 N 0.000
SALL3 Oryctolagus cuniculus ENSOCUG00000029398 N 0.000
SALL3 Otolemur garnettii ENSOGAG00000031681 N 0.000
SALL3 Anolis carolinensis ENSACAG00000000478 N 0.000
SALL3 Procavia capensis ENSPCAG00000006522 N 0.000
Sall3 Rattus norvegicus ENSRNOG00000026116 N 0.000
sall3a Danio rerio ENSDARG00000079613 N 0.000
sall3a Oryzias latipes ENSORLG00000020718 N 0.000
sall3a Gasterosteus aculeatus ENSGACG00000005503 N 0.000
sall3b Danio rerio ENSDARG00000057586 N 0.000
Tal_R008175 Tyto alba Tal_R008175 N 0.000
XP_002936493 Xenopus tropicalis XP_002936493 N 0.000
XP_002936494 Xenopus tropicalis XP_002936494 N 0.000
XP_002936495 Xenopus tropicalis XP_002936495 N 0.000