HDID_0000463301 (Hymenolepis diminuta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 HDID_0000463301 T234253_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.846 0.873
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.846 0.873
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.846 0.873
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.846 0.873
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.846 0.873
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.846 0.873
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.846 0.873
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.846 0.873
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.846 0.873
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.846 0.873
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.846 0.873
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.846 0.873
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.846 0.873
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.846 0.873
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.846 0.873
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.846 0.873
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.846 0.873
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.846 0.873
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.846 0.873
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.846 0.873
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.846 0.873
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.846 0.873
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.846 0.873
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.846 0.873
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.846 0.873
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.846 0.873
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.719 0.673
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.719 0.673
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.719 0.673
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.719 0.673
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.706 0.673
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.706 0.673
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.706 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.706 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.706 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.706 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.706 0.673
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.706 0.673
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.706 0.673
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.706 0.673
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.662 0.600
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HDID_0000463301-mRNA-1 Homeodomain 191 246

Links

Other Homeodomain family TFs
Other Hymenolepis diminuta TFs

538 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003875 Aedes aegypti AAEL003875 I 0.000
AALB008691 Anopheles albimanus AALB008691 I 0.000
Aan_R009568 Calypte anna Aan_R009568 I 0.000
AARA006360 Anopheles arabiensis AARA006360 I 0.000
AATE004178 Anopheles atroparvus AATE004178 I 0.000
ACHR002282 Anopheles christyi ACHR002282 I 0.000
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.000
ACUA022057 Anopheles culicifacies ACUA022057 I 0.000
ACYPI008586 Acyrthosiphon pisum ACYPI008586 I 0.000
ADAC004751 Anopheles darlingi ADAC004751 I 0.000
AFAF018385 Anopheles farauti AFAF018385 I 0.000
AFUN009419 Anopheles funestus AFUN009419 I 0.000
AGAP004438 Anopheles gambiae AGAP004438 I 0.000
Alligator_sinensis_CCG005388.1 Alligator sinensis Alligator_sinensis_CCG005388.1 I 0.000
ALUE_0000441701 Ascaris lumbricoides ALUE_0000441701 I 0.000
AMAM018005 Anopheles maculatus AMAM018005 I 0.000
AMEM016115 Anopheles merus AMEM016115 I 0.000
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.000
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.000
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.000
AQUA008497 Anopheles quadriannulatus AQUA008497 I 0.000
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.000
ASIS011603 Anopheles sinensis ASIS011603 I 0.000
ASTEI04919 Anopheles stephensi ASTEI04919 I 0.000
ASU_13052 Ascaris suum ASU_13052 I 0.000
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 I 0.000
BGLB011938 Biomphalaria glabrata BGLB011938 I 0.000
Bm6499 Brugia malayi Bm6499 I 0.000
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.000
CapteG112714 Capitella teleta CapteG112714 I 0.000
CBG20386 Caenorhabditis briggsae CBG20386 I 0.000
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.000
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.000
CLEC006997 Cimex lectularius CLEC006997 I 0.000
Cmyd_10006878 Chelonia mydas Cmyd_10006878 I 0.000
CPIJ003609 Culex quinquefasciatus CPIJ003609 I 0.000
CpipJ_CPIJ003609 Culex pipiens CpipJ_CPIJ003609 I 0.000
CRE28577 Caenorhabditis remanei CRE28577 I 0.000
D917_06327 Trichinella nativa D917_06327 I 0.000
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.000
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.000
EEL_0000517301 Elaeophora elaphi EEL_0000517301 I 0.000
EFV52785 Trichinella spiralis EFV52785 I 0.000
ENSAMEG00000012479 Ailuropoda melanoleuca ENSAMEG00000012479 I 0.000
ENSAPLG00000007170 Anas platyrhynchos ENSAPLG00000007170 I 0.000
ENSBTAP00000003929-D1 Bos grunniens ENSBTAP00000003929-D1 I 0.000
ENSCSAG00000005498 Chlorocebus sabaeus ENSCSAG00000005498 I 0.000
ENSECAG00000020197 Equus caballus ENSECAG00000020197 I 0.000
ENSGALG00000028401 Gallus gallus ENSGALG00000028401 I 0.000
ENSMEUG00000004493 Macropus eugenii ENSMEUG00000004493 I 0.000
ENSMMUP00000026353 Macaca fascicularis ENSMMUP00000026353 I 0.000
ENSNLEG00000017699 Nomascus leucogenys ENSNLEG00000017699 I 0.000
ENSOARG00000016514 Ovis aries ENSOARG00000016514 I 0.000
ENSONIG00000005121 Oreochromis niloticus ENSONIG00000005121 I 0.000
ENSPANG00000018241 Papio anubis ENSPANG00000018241 I 0.000
ENSPFOG00000007682 Poecilia formosa ENSPFOG00000007682 I 0.000
ENSPMAG00000000389 Petromyzon marinus ENSPMAG00000000389 I 0.000
ENSPPYG00000004579 Pongo abelii ENSPPYG00000004579 I 0.000
ENSPSIG00000007013 Pelodiscus sinensis ENSPSIG00000007013 I 0.000
ENSSTOG00000005928 Ictidomys tridecemlineatus ENSSTOG00000005928 I 0.000
ENSTSYG00000001068 Tarsius syrichta ENSTSYG00000001068 I 0.000
ENSXMAG00000017829 Xiphophorus maculatus ENSXMAG00000017829 I 0.000
EVEC_0000041101 Enterobius vermicularis EVEC_0000041101 I 0.000
Gfo_R005030 Geospiza fortis Gfo_R005030 I 0.000
GPLIN_000570600 Globodera pallida GPLIN_000570600 I 0.000
GPUH_0001030801 Gongylonema pulchrum GPUH_0001030801 I 0.000
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.000
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.000
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.000
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.000
L889_g32073 Steinernema feltiae L889_g32073 I 0.000
L892_g17070 Steinernema scapterisci L892_g17070 I 0.000
L893_g2044 Steinernema glaseri L893_g2044 I 0.000
L898_g7955 Steinernema monticolum L898_g7955 I 0.000
LCUP000151 Lucilia cuprina LCUP000151 I 0.000
LDEC008345 Leptinotarsa decemlineata LDEC008345 I 0.000
LLOJ008095 Lutzomyia longipalpis LLOJ008095 I 0.000
LOAG_01580 Loa loa LOAG_01580 I 0.000
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.000
Myotis_brandtii_SP1_10022992 Myotis brandtii Myotis_brandtii_SP1_10022992 I 0.000
nAv.1.0.1.g06936 Acanthocheilonema viteae nAv.1.0.1.g06936 I 0.000
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.000
nDi.2.2.2.g02202 Dirofilaria immitis nDi.2.2.2.g02202 I 0.000
NECAME_13378 Necator americanus NECAME_13378 I 0.000
nLs.2.1.2.g07946 Litomosoides sigmodontis nLs.2.1.2.g07946 I 0.000
nOo.2.0.1.g04030 Onchocerca ochengi nOo.2.0.1.g04030 I 0.000
nOo.2.0.1.g09582 Onchocerca ochengi nOo.2.0.1.g09582 I 0.000
Ogr16979 Ophisaurus gracilis Ogr16979 I 0.000
Pvit_07435 Pogona vitticeps Pvit_07435 I 0.000
RSKR_0000732300 Rhabditophanes kr3021 RSKR_0000732300 I 0.000
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.000
SMAR004952 Strigamia maritima SMAR004952 I 0.000
SMUV_0000007001 Syphacia muris SMUV_0000007001 I 0.000
SP1 Anolis carolinensis ENSACAG00000000610 I 0.000
SP1 Bos taurus ENSBTAG00000003021 I 0.000
SP1 Canis familiaris ENSCAFG00000006950 I 0.000
SP1 Choloepus hoffmanni ENSCHOG00000001703 I 0.000
SP1 Callithrix jacchus ENSCJAG00000018553 I 0.000
SP1 Cavia porcellus ENSCPOG00000023095 I 0.000
SP1 Dasypus novemcinctus ENSDNOG00000017346 I 0.000
SP1 Erinaceus europaeus ENSEEUG00000013568 I 0.000
SP1 Felis catus ENSFCAG00000030741 I 0.000
SP1 Homo sapiens ENSG00000185591 D 0.000
SP1 Gorilla gorilla ENSGGOG00000012593 I 0.000
SP1 Loxodonta africana ENSLAFG00000018043 I 0.000
SP1 Myotis lucifugus ENSMLUG00000017303 I 0.000
SP1 Macaca mulatta ENSMMUG00000020036 I 0.000
Sp1 Mus musculus ENSMUSG00000001280 D 0.000
SP1 Oryctolagus cuniculus ENSOCUG00000004147 I 0.000
SP1 Ochotona princeps ENSOPRG00000000691 I 0.000
sp1 Oryzias latipes ENSORLG00000005195 I 0.000
SP1 Procavia capensis ENSPCAG00000004934 I 0.000
SP1 Pan troglodytes ENSPTRG00000005014 I 0.000
SP1 Pteropus vampyrus ENSPVAG00000012280 I 0.000
Sp1 Rattus norvegicus ENSRNOG00000014084 I 0.000
SP1 Sorex araneus ENSSARG00000013480 I 0.000
SP1 Sus scrofa ENSSSCG00000000272 I 0.000
SP1 Tupaia belangeri ENSTBEG00000010202 I 0.000
SP1 Taeniopygia guttata ENSTGUG00000015642 I 0.000
sp1 Tetraodon nigroviridis ENSTNIG00000007066 I 0.000
sp1 Takifugu rubripes ENSTRUG00000014305 I 0.000
SP1 Tursiops truncatus ENSTTRG00000009591 I 0.000
sptf-3 Caenorhabditis elegans WBGene00012735 D 0.000
SPU_009831 Strongylocentrotus purpuratus SPU_009831 I 0.000
SPU_009832 Strongylocentrotus purpuratus SPU_009832 I 0.000
WBGene00237583 Onchocerca volvulus WBGene00237583 I 0.000
WBGene00237584 Onchocerca volvulus WBGene00237584 I 0.000