nLs.2.1.2.g03086 (Litomosoides sigmodontis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nLs.2.1.2.g03086 T235408_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.607 0.522
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.607 0.522
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.607 0.522
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.607 0.522
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.607 0.522
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t03086-RA Homeodomain 163 208

Links

Other Homeodomain family TFs
Other Litomosoides sigmodontis TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001649 Calypte anna Aan_R001649 I 0.607
Afo_R010343 Aptenodytes forsteri Afo_R010343 I 0.607
ALUE_0000011401 Ascaris lumbricoides ALUE_0000011401 I 0.631
ALUE_0001616301 Ascaris lumbricoides ALUE_0001616301 I 0.631
ANCCAN_20712 Ancylostoma caninum ANCCAN_20712 I 0.608
ANCCEY_01677 Ancylostoma ceylanicum ANCCEY_01677 N 0.760
ANCDUO_14963 Ancylostoma duodenale ANCDUO_14963 I 0.608
ANCDUO_23484 Ancylostoma duodenale ANCDUO_23484 N 0.776
ASU_04955 Ascaris suum ASU_04955 I 0.631
Bm522 Brugia malayi Bm522 N 0.786
BTMF_0000534901 Brugia timori BTMF_0000534901 N 0.725
CGOC_0001175101 Cylicostephanus goldi CGOC_0001175101 I 0.608
CJA17634 Caenorhabditis japonica CJA17634 I 0.715
Cmyd_10008495 Chelonia mydas Cmyd_10008495 I 0.607
DME_0000792901 Dracunculus medinensis DME_0000792901 I 0.629
EEL_0000988301 Elaeophora elaphi EEL_0000988301 N 0.777
ENSAMEG00000002968 Ailuropoda melanoleuca ENSAMEG00000002968 I 0.607
ENSAMXG00000019352 Astyanax mexicanus ENSAMXG00000019352 I 0.611
ENSAPLG00000008107 Anas platyrhynchos ENSAPLG00000008107 I 0.607
ENSCPOG00000014392 Cavia porcellus ENSCPOG00000014392 I 0.607
ENSCSAG00000014171 Chlorocebus sabaeus ENSCSAG00000014171 I 0.607
ENSFALG00000003446 Ficedula albicollis ENSFALG00000003446 I 0.607
ENSGMOG00000010829 Gadus morhua ENSGMOG00000010829 I 0.607
ENSLACG00000018526 Latimeria chalumnae ENSLACG00000018526 I 0.607
ENSLOCG00000010093 Lepisosteus oculatus ENSLOCG00000010093 I 0.607
ENSMEUG00000015192 Macropus eugenii ENSMEUG00000015192 I 0.607
ENSMMUG00000001640 Macaca mulatta ENSMMUG00000001640 I 0.607
ENSMMUP00000024349 Macaca fascicularis ENSMMUP00000024349 N 0.689
ENSOARG00000021130 Ovis aries ENSOARG00000021130 I 0.607
ENSONIG00000020117 Oreochromis niloticus ENSONIG00000020117 I 0.606
ENSPANG00000020970 Papio anubis ENSPANG00000020970 I 0.607
ENSPFOG00000004053 Poecilia formosa ENSPFOG00000004053 I 0.606
ENSPPYG00000005875 Pongo abelii ENSPPYG00000005875 I 0.607
ENSSHAG00000016030 Sarcophilus harrisii ENSSHAG00000016030 I 0.607
ENSSTOG00000029039 Ictidomys tridecemlineatus ENSSTOG00000029039 I 0.607
ENSTSYG00000001908 Tarsius syrichta ENSTSYG00000001908 I 0.607
ENSXMAG00000013480 Xiphophorus maculatus ENSXMAG00000013480 I 0.606
HelroG92182 Helobdella robusta HelroG92182 N 0.654
HPBE_0001084301 Heligmosomoides bakeri HPBE_0001084301 I 0.608
HPLM_0001489701 Haemonchus placei HPLM_0001489701 I 0.608
Myotis_brandtii_SIX4_10027187 Myotis brandtii Myotis_brandtii_SIX4_10027187 I 0.607
NBR_0000072001 Nippostrongylus brasiliensis NBR_0000072001 I 0.608
Ogr08726 Ophisaurus gracilis Ogr08726 I 0.607
PEQ_0000072101 Parascaris equorum PEQ_0000072101 N 0.691
PEQ_0000211101 Parascaris equorum PEQ_0000211101 N 0.695
PEQ_0000660801 Parascaris equorum PEQ_0000660801 I 0.694
PXEA_0002133501 Protopolystoma xenopodis PXEA_0002133501 I 0.728
SIX4 Sus scrofa ENSSSCG00000005089 I 0.607
SIX4 Monodelphis domestica ENSMODG00000008646 I 0.607
SIX4 Canis familiaris ENSCAFG00000015627 I 0.607
SIX4 Callithrix jacchus ENSCJAG00000019133 I 0.607
SIX4 Dasypus novemcinctus ENSDNOG00000044446 I 0.607
SIX4 Equus caballus ENSECAG00000023515 I 0.607
SIX4 Homo sapiens ENSG00000100625 D 0.607
SIX4 Gallus gallus ENSGALG00000017389 I 0.607
SIX4 Loxodonta africana ENSLAFG00000021577 I 0.607
SIX4 Meleagris gallopavo ENSMGAG00000013569 I 0.607
SIX4 Microcebus murinus ENSMICG00000003524 I 0.607
Six4 Mus musculus ENSMUSG00000034460 D 0.607
SIX4 Otolemur garnettii ENSOGAG00000016082 I 0.607
SIX4 Ochotona princeps ENSOPRG00000011678 I 0.607
SIX4 Procavia capensis ENSPCAG00000014927 I 0.607
SIX4 Pan troglodytes ENSPTRG00000006411 I 0.607
Six4 Rattus norvegicus ENSRNOG00000007250 I 0.607
six4a Oryzias latipes ENSORLG00000015756 I 0.606
six4a Gasterosteus aculeatus ENSGACG00000008440 I 0.606
six4a Tetraodon nigroviridis ENSTNIG00000017344 I 0.606
six4a Danio rerio ENSDARG00000004695 I 0.607
six4a Takifugu rubripes ENSTRUG00000010704 I 0.606
six4b Danio rerio ENSDARG00000031983 I 0.599
SNAPOd2T00005340001 Oikopleura dioica SNAPOd2T00005340001 N 0.644
snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 N 0.700
SVUK_0000475301 Strongylus vulgaris SVUK_0000475301 I 0.608
SVUK_0002108701 Strongylus vulgaris SVUK_0002108701 N 0.684
TCLT_0000291601 Thelazia callipaeda TCLT_0000291601 I 0.725
TCLT_0000938801 Thelazia callipaeda TCLT_0000938801 N 0.776
TCNE_0000507501 Toxocara canis TCNE_0000507501 N 0.706
WBGene00242653 Onchocerca volvulus WBGene00242653 N 0.786
YQE_03710 Dendroctonus ponderosae YQE_03710 I 0.730