nOo.2.0.1.g05850 (Onchocerca ochengi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nOo.2.0.1.g05850 T235476_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.827 0.800
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.827 0.800
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.827 0.800
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.827 0.800
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.827 0.800
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.827 0.800
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.827 0.800
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.827 0.800
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.827 0.800
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.827 0.800
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.827 0.800
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.827 0.800
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.827 0.800
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.827 0.800
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.827 0.800
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.827 0.800
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.827 0.800
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.827 0.800
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.826 0.764
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.826 0.764
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.826 0.764
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.826 0.764
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.826 0.764
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.826 0.764
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.826 0.764
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.826 0.764
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.706 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.706 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.706 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.706 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.706 0.673
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.706 0.655
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.706 0.655
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.706 0.655
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.706 0.655
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.706 0.655
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.706 0.618
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.706 0.618
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.706 0.618
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.706 0.618
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.668 0.564
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nOo.2.0.1.t05850-RA Homeodomain 133 187

Links

Other Homeodomain family TFs
Other Onchocerca ochengi TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_078350 Acremonium chrysogenum ACRE_078350 N 0.000
AFUA_5G01550 Aspergillus fumigatus CADAFUAG00002870 N 0.000
BBA_03307 Beauveria bassiana BBA_03307 N 0.000
CADANGAG00005441 Aspergillus niger CADANGAG00005441 N 0.000
CFIO01_02089 Colletotrichum fioriniae CFIO01_02089 N 0.000
CFIO01_08628 Colletotrichum fioriniae CFIO01_08628 N 0.000
CGGC5_8904 Colletotrichum gloeosporioides CGGC5_8904 N 0.000
CH063_07573 Colletotrichum higginsianum CH063_07573 N 0.000
CMQ_1388 Grosmannia clavigera CMQ_1388 N 0.000
Cob_02086 Colletotrichum orbiculare Cob_02086 N 0.000
Cob_09017 Colletotrichum orbiculare Cob_09017 N 0.000
CSUB01_05917 Colletotrichum sublineola CSUB01_05917 N 0.000
estExt_Genewise1.C_sca_17_chr8_1_00336 Nectria haematococca estExt_Genewise1.C_sca_17_chr8_1_00336 N 0.000
e_gw1.00771.84.1 Aspergillus carbonarius e_gw1.00771.84.1 N 0.000
e_gw1.20.1612.1 Nectria haematococca e_gw1.20.1612.1 N 0.000
F503_02152 Ophiostoma piceae uamh F503_02152 N 0.000
FFUJ_00276 Fusarium fujikuroi FFUJ_00276 N 0.000
FFUJ_08949 Fusarium fujikuroi FFUJ_08949 N 0.000
FFUJ_10046 Fusarium fujikuroi FFUJ_10046 N 0.000
fgenesh1_pg.sca_11_chr8_3_0000285 Nectria haematococca fgenesh1_pg.sca_11_chr8_3_0000285 N 0.000
fgenesh1_pg.sca_5_chr5_3_0000637 Nectria haematococca fgenesh1_pg.sca_5_chr5_3_0000637 N 0.000
FGRRES_00217 Fusarium graminearum FGRRES_00217 N 0.000
FGRRES_09014 Fusarium graminearum FGRRES_09014 N 0.000
FOXG_01257 Fusarium oxysporum FOXG_01257 N 0.000
FOXG_09079 Fusarium oxysporum FOXG_09079 N 0.000
FOXG_13654 Fusarium oxysporum FOXG_13654 N 0.000
FPSE_06963 Fusarium pseudograminearum FPSE_06963 N 0.000
FVEG_06682 Fusarium verticillioides FVEG_06682 N 0.000
FVEG_11090 Fusarium verticillioides FVEG_11090 N 0.000
GGTG_12271 Gaeumannomyces graminis GGTG_12271 N 0.000
GLRG_04837 Colletotrichum graminicola GLRG_04837 N 0.000
HMPREF1624_05416 Sporothrix schenckii HMPREF1624_05416 N 0.000
M438DRAFT_402343 Aureobasidium pullulans M438DRAFT_402343 N 0.000
MAC_07316 Metarhizium acridum MAC_07316 N 0.000
MAJ_09423 Metarhizium majus MAJ_09423 N 0.000
MAM_07146 Metarhizium album MAM_07146 N 0.000
MANI_005235 Metarhizium anisopliae MANI_005235 N 0.000
MAPG_09611 Magnaporthe poae MAPG_09611 N 0.000
MBR_09867 Metarhizium brunneum MBR_09867 N 0.000
MGU_07052 Metarhizium guizhouense MGU_07052 N 0.000
NechaG44183 Fusarium solani NechaG44183 N 0.000
NechaG62595 Fusarium solani NechaG62595 N 0.000
NechaG80838 Fusarium solani NechaG80838 N 0.000
NechaG84217 Fusarium solani NechaG84217 N 0.000
OIDMADRAFT_169765 Oidiodendron maius OIDMADRAFT_169765 N 0.000
Pc16g10860 Penicillium chrysogenum Pc16g10860 N 0.000
PCH_Pc16g10860 Penicillium rubens PCH_Pc16g10860 N 0.000
PEX1_030190 Penicillium expansum PEX1_030190 N 0.000
PFICI_07869 Pestalotiopsis fici PFICI_07869 N 0.000
PITC_081790 Penicillium italicum PITC_081790 N 0.000
PMAA_080390 Penicillium marneffei PMAA_080390 N 0.000
PMAA_080390 Talaromyces marneffei PMAA_080390 N 0.000
PODANS_2_6520 Podospora anserina PODANS_2_6520 N 0.000
PV05_00069 Exophiala xenobiotica PV05_00069 N 0.000
PV07_02862 Cladophialophora immunda PV07_02862 N 0.000
PV11_06549 Exophiala sideris PV11_06549 N 0.000
S40285_02230 Stachybotrys chlorohalonata S40285_02230 N 0.000
S40288_03755 Stachybotrys chartarum S40288_03755 N 0.000
SAPIO_CDS8323 Scedosporium apiospermum SAPIO_CDS8323 N 0.000
SNOG_10852 Stagonospora nodorum SNOG_10852 N 0.000
SPBR_04675 Sporothrix brasiliensis SPBR_04675 N 0.000
THITE_2107846 Thielavia terrestris THITE_2107846 N 0.000
TRIATDRAFT_322087 Trichoderma atroviride TRIATDRAFT_322087 N 0.000
TSTA_114940 Talaromyces stipitatus TSTA_114940 N 0.000
U727_00431181161 Penicillium solitum U727_00431181161 N 0.000
UCRPA7_5783 Togninia minima UCRPA7_5783 N 0.000
VDAG_05079 Verticillium dahliae VDAG_05079 N 0.000
VDBG_06541 Verticillium alfalfae VDBG_06541 N 0.000
VDBG_06541 Verticillium albo atrum VDBG_06541 N 0.000
VHEMI08639 Torrubiella hemipterigena VHEMI08639 N 0.000
X797_009746 Metarhizium robertsii X797_009746 N 0.000
Z517_00469 Fonsecaea pedrosoi Z517_00469 N 0.000
Z518_11281 Rhinocladiella mackenziei Z518_11281 N 0.000