SVE_1583100 (Strongyloides venezuelensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVE_1583100 T236584_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.846 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.846 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.846 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.846 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.846 0.930
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.846 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.846 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.846 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.846 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.845 0.895
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.845 0.895
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.845 0.895
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.845 0.895
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.845 0.895
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.845 0.895
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.845 0.895
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.839 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_1583100.1 Homeodomain 196 252

Links

Other Homeodomain family TFs
Other Strongyloides venezuelensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N 0.000
Cmyd_10003232 Chelonia mydas Cmyd_10003232 N 0.000
Cmyd_10003577 Chelonia mydas Cmyd_10003577 N 0.000
Cmyd_10003654 Chelonia mydas Cmyd_10003654 N 0.000
Cmyd_10003938 Chelonia mydas Cmyd_10003938 N 0.000
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N 0.000
Cmyd_10004478 Chelonia mydas Cmyd_10004478 N 0.000
Cmyd_10004862 Chelonia mydas Cmyd_10004862 N 0.000
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N 0.000
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N 0.000
Cmyd_10006184 Chelonia mydas Cmyd_10006184 N 0.000
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N 0.000
Cmyd_10006667 Chelonia mydas Cmyd_10006667 N 0.000
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N 0.000
Cmyd_10007153 Chelonia mydas Cmyd_10007153 N 0.000
Cmyd_10007297 Chelonia mydas Cmyd_10007297 N 0.000
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N 0.000
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N 0.000
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N 0.000
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N 0.000
Cmyd_10009304 Chelonia mydas Cmyd_10009304 N 0.000
Cmyd_10009364 Chelonia mydas Cmyd_10009364 N 0.000
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N 0.000
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N 0.000
Cmyd_10011070 Chelonia mydas Cmyd_10011070 N 0.000
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N 0.000
Cmyd_10011209 Chelonia mydas Cmyd_10011209 N 0.000
Cmyd_10011918 Chelonia mydas Cmyd_10011918 N 0.000
Cmyd_10012049 Chelonia mydas Cmyd_10012049 N 0.000
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N 0.000
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N 0.000
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N 0.000
Cmyd_10012194 Chelonia mydas Cmyd_10012194 N 0.000
Cmyd_10012340 Chelonia mydas Cmyd_10012340 N 0.000
Cmyd_10012695 Chelonia mydas Cmyd_10012695 N 0.000
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N 0.000
Cmyd_10012830 Chelonia mydas Cmyd_10012830 N 0.000
Cmyd_10012986 Chelonia mydas Cmyd_10012986 N 0.000
Cmyd_10013046 Chelonia mydas Cmyd_10013046 N 0.000
Cmyd_10013718 Chelonia mydas Cmyd_10013718 N 0.000
Cmyd_10013772 Chelonia mydas Cmyd_10013772 N 0.000
Cmyd_10013937 Chelonia mydas Cmyd_10013937 N 0.000
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N 0.000
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N 0.000
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N 0.000
Cmyd_10015203 Chelonia mydas Cmyd_10015203 N 0.000
Cmyd_10015316 Chelonia mydas Cmyd_10015316 N 0.000
Cmyd_10016076 Chelonia mydas Cmyd_10016076 N 0.000
Cmyd_10016112 Chelonia mydas Cmyd_10016112 N 0.000
Cmyd_10016495 Chelonia mydas Cmyd_10016495 N 0.000
Cmyd_10016498 Chelonia mydas Cmyd_10016498 N 0.000
Cmyd_10016912 Chelonia mydas Cmyd_10016912 N 0.000
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N 0.000
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N 0.000
Cmyd_10017755 Chelonia mydas Cmyd_10017755 N 0.000
Cmyd_10017938 Chelonia mydas Cmyd_10017938 N 0.000
Cmyd_10018053 Chelonia mydas Cmyd_10018053 N 0.000