TMUE_s0001027500 (Trichuris muris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TMUE_s0001027500 T236913_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0001027500 Homeodomain 164 220

Links

Other Homeodomain family TFs
Other Trichuris muris TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC165171.2_FG002 Zea mays AC165171.2_FG002 I 0.000
AC205562.3_FG002 Zea mays AC205562.3_FG002 I 0.000
Al_scaffold_0008_672 Arabidopsis lyrata Al_scaffold_0008_672 I 0.000
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.000
BGIOSGA023706 Oryza indica BGIOSGA023706 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.000
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.000
BGIOSGA040489 Oryza indica BGIOSGA040489 I 0.000
Bo3g035140 Brassica oleracea Bo3g035140 I 0.000
Bo4g101290 Brassica oleracea Bo4g101290 I 0.000
Bo4g190390 Brassica oleracea Bo4g190390 I 0.000
Bostr.13158s0168 Boechera stricta Bostr.13158s0168 I 0.000
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.000
Bostr.3148s0146 Boechera stricta Bostr.3148s0146 I 0.000
Bra000203 Brassica rapa Bra000203 I 0.000
Bra004586 Brassica rapa Bra004586 I 0.000
Bra014426 Brassica rapa Bra014426 I 0.000
Bra016974 Brassica rapa Bra016974 I 0.000
BRADI1G17660 Brachypodium distachyon BRADI1G17660 I 0.000
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.000
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I 0.000
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I 0.000
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I 0.000
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I 0.000
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N 0.000
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.000
Cagra.0483s0080 Capsella grandiflora Cagra.0483s0080 I 0.000
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I 0.000
Cagra.9063s0001 Capsella grandiflora Cagra.9063s0001 I 0.000
Carubv10019489m.g Capsella rubella Carubv10019489m.g I 0.000
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.000
Carubv10024972m.g Capsella rubella Carubv10024972m.g I 0.000
Carubv10026841m.g Capsella rubella Carubv10026841m.g I 0.000
chr1.CM0147.890.nc Lotus japonicus chr1.CM0147.890.nc I 0.000
chr2.CM0641.50.nc Lotus japonicus chr2.CM0641.50.nc I 0.000
Ciclev10013616m.g Citrus clementina Ciclev10013616m.g I 0.000
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.000
Cla018477 Citrullus lanatus Cla018477 I 0.000
Cucsa.042350 Cucumis sativus Cucsa.042350 I 0.000
Cucsa.066300 Cucumis sativus Cucsa.066300 I 0.000
F775_00860 Aegilops tauschii F775_00860 I 0.000
F775_03183 Aegilops tauschii F775_03183 N 0.000
F775_03184 Aegilops tauschii F775_03184 I 0.000
F775_07376 Aegilops tauschii F775_07376 I 0.000
F775_15928 Aegilops tauschii F775_15928 I 0.000
F775_21933 Aegilops tauschii F775_21933 I 0.000
F775_25840 Aegilops tauschii F775_25840 I 0.000
fgenesh1_pm.C_scaffold_5002145 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002145 I 0.000
fgenesh2_kg.97__1__AT5G43290.1 Arabidopsis lyrata fgenesh2_kg.97__1__AT5G43290.1 I 0.000
gene18438-v1.0-hybrid Fragaria vesca gene18438-v1.0-hybrid I 0.000
gene19219-v1.0-hybrid Fragaria vesca gene19219-v1.0-hybrid I 0.000
GLYMA07G16040 Glycine max GLYMA07G16040 I 0.000
GLYMA18G39970 Glycine max GLYMA18G39970 I 0.000
GRMZM2G025895 Zea mays GRMZM2G025895 I 0.000
GRMZM2G059562 Zea mays GRMZM2G059562 I 0.000
GRMZM2G061408 Zea mays GRMZM2G061408 I 0.000
GRMZM2G169564 Zea mays GRMZM2G169564 N 0.000
GRMZM2G324999 Zea mays GRMZM2G324999 I 0.000
GRMZM2G381378 Zea mays GRMZM2G381378 I 0.000
GSMUA_Achr10G00810_001 Musa acuminata GSMUA_Achr10G00810_001 I 0.000
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.000
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.000
GSMUA_Achr7G14140_001 Musa acuminata GSMUA_Achr7G14140_001 I 0.000
GSMUA_Achr7G15060_001 Musa acuminata GSMUA_Achr7G15060_001 I 0.000
GSMUA_Achr8G02180_001 Musa acuminata GSMUA_Achr8G02180_001 I 0.000
GSMUA_AchrUn_randomG18710_001 Musa acuminata GSMUA_AchrUn_randomG18710_001 I 0.000
LPERR03G14340 Leersia perrieri LPERR03G14340 I 0.000
LPERR05G16150 Leersia perrieri LPERR05G16150 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR07G23280 Leersia perrieri LPERR07G23280 I 0.000
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.000
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.000
MDP0000205962 Malus domestica MDP0000205962 I 0.000
MDP0000255768 Malus domestica MDP0000255768 I 0.000
MDP0000455180 Malus domestica MDP0000455180 I 0.000
MDP0000727570 Malus domestica MDP0000727570 I 0.000
MLOC_5971 Hordeum vulgare MLOC_5971 I 0.000
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.000
MLOC_74606 Hordeum vulgare MLOC_74606 I 0.000
MLOC_74884 Hordeum vulgare MLOC_74884 I 0.000
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.000
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.000
MTR_7g062220 Medicago truncatula MTR_7g062220 I 0.000
OB03G26140 Oryza brachyantha OB03G26140 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB07G31890 Oryza brachyantha OB07G31890 I 0.000
OB11G10760 Oryza brachyantha OB11G10760 N 0.000
OB12G11030 Oryza brachyantha OB12G11030 N 0.000
OBART03G16400 Oryza barthii OBART03G16400 I 0.000
OBART05G11710 Oryza barthii OBART05G11710 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART07G26430 Oryza barthii OBART07G26430 I 0.000
OBART11G01110 Oryza barthii OBART11G01110 I 0.000
OBART12G00850 Oryza barthii OBART12G00850 N 0.000
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.000
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I 0.000
OGLUM07G26470 Oryza glumaepatula OGLUM07G26470 I 0.000
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.000
OLONG_008209 Oryza longistaminata OLONG_008209 I 0.000
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.000
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
OMERI07G23060 Oryza meridionalis OMERI07G23060 I 0.000
OMERI08G11390 Oryza meridionalis OMERI08G11390 I 0.000
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.000
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.000
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA07G26140 Oryza nivara ONIVA07G26140 I 0.000
ONIVA08G13920 Oryza nivara ONIVA08G13920 I 0.000
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.000
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC09G05480 Oryza punctata OPUNC09G05480 I 0.000
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.000
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.000
orange1.1g008458m.g Citrus sinensis orange1.1g008458m.g I 0.000
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.000
orange1.1g038951m.g Citrus sinensis orange1.1g038951m.g I 0.000
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA07G0207800 Oryza glaberrima ORGLA07G0207800 I 0.000
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I 0.000
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.000
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.000
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.000
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI07G27440 Oryza rufipogon ORUFI07G27440 I 0.000
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I 0.000
OS03G0335200 Oryza sativa OS03G0335200 I 0.000
OS05G0322900 Oryza sativa OS05G0322900 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS07G0680400 Oryza sativa OS07G0680400 I 0.000
OS08G0386200 Oryza sativa OS08G0386200 I 0.000
OS11G0117500 Oryza sativa OS11G0117500 N 0.000
OS12G0116700 Oryza sativa OS12G0116700 N 0.000
Pavir.Ba00227 Panicum virgatum Pavir.Ba00227 I 0.000
Pavir.Bb03750 Panicum virgatum Pavir.Bb03750 N 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ea03258 Panicum virgatum Pavir.Ea03258 I 0.000
Pavir.Eb03563 Panicum virgatum Pavir.Eb03563 I 0.000
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.000
Pavir.J37854 Panicum virgatum Pavir.J37854 I 0.000
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I 0.000
PDK_20s1521921g002 Phoenix dactylifera PDK_20s1521921g002 I 0.000
PK10616.1 Cannabis sativa PK10616.1 I 0.000
Pm002679 Prunus mume Pm002679 I 0.000
PRUPE_ppa019550mg Prunus persica PRUPE_ppa019550mg I 0.000
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.000
Sb02g043030 Sorghum bicolor Sb02g043030 I 0.000
Sb03g038210 Sorghum bicolor Sb03g038210 I 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
Sb07g019400 Sorghum bicolor Sb07g019400 I 0.000
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.000
scaffold_800733.1 Arabidopsis lyrata scaffold_800733.1 I 0.000
scaffold_800734.1 Arabidopsis lyrata scaffold_800734.1 I 0.000
scaffold_9700001.1 Arabidopsis lyrata scaffold_9700001.1 I 0.000
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.000
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.000
SELMODRAFT_29702 Selaginella moellendorffii SELMODRAFT_29702 I 0.000
SELMODRAFT_29703 Selaginella moellendorffii SELMODRAFT_29703 I 0.000
Si002401m.g Setaria italica Si002401m.g I 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
Si015433m.g Setaria italica Si015433m.g I 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si027574m.g Setaria italica Si027574m.g I 0.000
Si030395m.g Setaria italica Si030395m.g I 0.000
Si030528m.g Setaria italica Si030528m.g I 0.000
Si036565m.g Setaria italica Si036565m.g I 0.000
TCM_021911 Theobroma cacao TCM_021911 I 0.000
Thhalv10003250m.g Eutrema salsugineum Thhalv10003250m.g I 0.000
Thhalv10016713m.g Eutrema salsugineum Thhalv10016713m.g I 0.000
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I 0.000
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I 0.000
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I 0.000
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I 0.000
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I 0.000
TRIUR3_06813 Triticum urartu TRIUR3_06813 I 0.000
TRIUR3_17401 Triticum urartu TRIUR3_17401 I 0.000
WRKY46 Arabidopsis thaliana AT2G46400 D 0.000
WRKY46 Arabidopsis lyrata fgenesh2_kg.4__2854__AT2G46400.1 I 0.000
WRKY49 Vitis vinifera VIT_08s0007g00570 I 0.000