IRF6 (Pan troglodytes)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSPTRG00000001941 T244346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		1.000 1.000
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		1.000 1.000
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		1.000 1.000
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		1.000 1.000
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		1.000 1.000
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.943 0.943
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.933 0.933
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.914 0.914
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.790 0.790
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000003274 IRF 9 114

Links

Other IRF family TFs
Other Pan troglodytes TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00902s070 Brassica oleracea Bo00902s070 N
Bo1g051270 Brassica oleracea Bo1g051270 N
Bo7g111950 Brassica oleracea Bo7g111950 N
Bostr.7867s0654 Boechera stricta Bostr.7867s0654 N
Bostr.7903s0074 Boechera stricta Bostr.7903s0074 N
Bra024219 Brassica rapa Bra024219 N
Bra026276 Brassica rapa Bra026276 N
Bra036504 Brassica rapa Bra036504 N
Cagra.1225s0078 Capsella grandiflora Cagra.1225s0078 N
Cagra.20132s0010 Capsella grandiflora Cagra.20132s0010 N
Carubv10005638m.g Capsella rubella Carubv10005638m.g N
Carubv10014550m.g Capsella rubella Carubv10014550m.g N
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N
chr3.CM0711.550.nd Lotus japonicus chr3.CM0711.550.nd N
GLYMA06G45180 Glycine max GLYMA06G45180 N
GLYMA12G11800 Glycine max GLYMA12G11800 N
MTR_2g090080 Medicago truncatula MTR_2g090080 N
OB05G29560 Oryza brachyantha OB05G29560 N
PGSC0003DMG400018322 Solanum tuberosum PGSC0003DMG400018322 N
Solyc07g054450.2 Solanum lycopersicum Solyc07g054450.2 N
Thhalv10002089m.g Eutrema salsugineum Thhalv10002089m.g N
ULT1 Arabidopsis lyrata fgenesh2_kg.7__1389__AT4G28190.1 N
ULT1 Arabidopsis thaliana AT4G28190 N
ULT2 Arabidopsis thaliana AT2G20825 N
ULT2 Arabidopsis lyrata fgenesh2_kg.3__3624__AT2G20825.1 N