Alligator_sinensis_CCG011335.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG011335.1 T244512_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.839 0.839
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.839 0.839
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.839 0.839
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.839 0.839
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.839 0.839
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.839 0.839
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.839 0.839
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.804 0.804
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011335.1 IRF 9 64

Links

Other IRF family TFs
Other Alligator sinensis TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA013705 Oryza indica BGIOSGA013705 N
BGIOSGA029005 Oryza indica BGIOSGA029005 N
BRADI3G40650 Brachypodium distachyon BRADI3G40650 N
F775_04514 Aegilops tauschii F775_04514 N
GRMZM2G132667 Zea mays GRMZM2G132667 N
LPERR03G31200 Leersia perrieri LPERR03G31200 N
LPERR08G17300 Leersia perrieri LPERR08G17300 N
OB08G27360 Oryza brachyantha OB08G27360 N
OGLUM03G36620 Oryza glumaepatula OGLUM03G36620 N
OGLUM08G21760 Oryza glumaepatula OGLUM08G21760 N
OLONG_019406 Oryza longistaminata OLONG_019406 N
OMERI02G02130 Oryza meridionalis OMERI02G02130 N
ONIVA08G23410 Oryza nivara ONIVA08G23410 N
OPUNC03G33890 Oryza punctata OPUNC03G33890 N
OPUNC08G18660 Oryza punctata OPUNC08G18660 N
ORUFI08G22960 Oryza rufipogon ORUFI08G22960 N
OS08G0517100 Oryza sativa OS08G0517100 N
Pavir.Cb01140 Panicum virgatum Pavir.Cb01140 N
Pavir.Fb01953 Panicum virgatum Pavir.Fb01953 N
Pavir.J04242 Panicum virgatum Pavir.J04242 N
Pavir.J05299 Panicum virgatum Pavir.J05299 N
Pavir.J09684 Panicum virgatum Pavir.J09684 N
PDK_20s1718401g002 Phoenix dactylifera PDK_20s1718401g002 N
Sb01g005700 Sorghum bicolor Sb01g005700 N
Sb07g026800 Sorghum bicolor Sb07g026800 N
Si015521m.g Setaria italica Si015521m.g N
Si039129m.g Setaria italica Si039129m.g N
Traes_5BL_26B26165E Triticum aestivum Traes_5BL_26B26165E N
TRIUR3_34186 Triticum urartu TRIUR3_34186 N