Cagra.2636s0029 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.2636s0029 T246735_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.970 0.970
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.970 0.970
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.970 0.970
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.758 0.758
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.758 0.758
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.727 0.727
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2636s0029.1.p LOB 15 114

Links

Other LOB family TFs
Other Capsella grandiflora TFs

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012404 Aedes aegypti AAEL012404 I 0.000
Aan_R009569 Calypte anna Aan_R009569 I 0.000
AARA010384 Anopheles arabiensis AARA010384 I 0.000
ACEP25215 Atta cephalotes ACEP25215 I 0.000
ACUA022925 Anopheles culicifacies ACUA022925 I 0.000
ACYPI008529 Acyrthosiphon pisum ACYPI008529 I 0.000
AEPI000655 Anopheles epiroticus AEPI000655 I 0.000
AFAF010157 Anopheles farauti AFAF010157 I 0.000
AFUN011444 Anopheles funestus AFUN011444 I 0.000
AGAP000673 Anopheles gambiae AGAP000673 I 0.000
Alligator_sinensis_CCG005389.1 Alligator sinensis Alligator_sinensis_CCG005389.1 I 0.000
Alligator_sinensis_CCG014455.1 Alligator sinensis Alligator_sinensis_CCG014455.1 I 0.000
AMEC017534 Anopheles melas AMEC017534 I 0.000
AMEM002678 Anopheles merus AMEM002678 I 0.000
AMIN002038 Anopheles minimus AMIN002038 I 0.000
ASTEI01151 Anopheles stephensi ASTEI01151 I 0.000
BGIBMGA006943 Bombyx mori BGIBMGA006943 I 0.000
CapteG224157 Capitella teleta CapteG224157 I 0.000
CapteG39149 Capitella teleta CapteG39149 I 0.000
CapteG39158 Capitella teleta CapteG39158 I 0.000
CGI_10004780 Crassostrea gigas CGI_10004780 I 0.000
CGI_10004781 Crassostrea gigas CGI_10004781 I 0.000
CLEC009335 Cimex lectularius CLEC009335 I 0.000
Cmyd_10015831 Chelonia mydas Cmyd_10015831 I 0.000
Cmyd_10021667 Chelonia mydas Cmyd_10021667 I 0.000
DAPPUDRAFT_106303 Daphnia pulex DAPPUDRAFT_106303 I 0.000
ENSAMEG00000019390 Ailuropoda melanoleuca ENSAMEG00000019390 I 0.000
ENSAMXG00000004709 Astyanax mexicanus ENSAMXG00000004709 I 0.000
ENSAMXG00000015246 Astyanax mexicanus ENSAMXG00000015246 I 0.000
ENSAMXG00000020011 Astyanax mexicanus ENSAMXG00000020011 I 0.000
ENSAMXG00000024824 Astyanax mexicanus ENSAMXG00000024824 I 0.000
ENSBTAP00000005689-D1 Bos grunniens ENSBTAP00000005689-D1 I 0.000
ENSCPOG00000019815 Cavia porcellus ENSCPOG00000019815 I 0.000
ENSCSAG00000013600 Chlorocebus sabaeus ENSCSAG00000013600 I 0.000
ENSCSAG00000014648 Chlorocebus sabaeus ENSCSAG00000014648 I 0.000
ENSCSAG00000019258 Chlorocebus sabaeus ENSCSAG00000019258 I 0.000
ENSECAG00000002849 Equus caballus ENSECAG00000002849 I 0.000
ENSGMOG00000001278 Gadus morhua ENSGMOG00000001278 I 0.000
ENSGMOG00000004590 Gadus morhua ENSGMOG00000004590 I 0.000
ENSGMOG00000008078 Gadus morhua ENSGMOG00000008078 I 0.000
ENSLACG00000013206 Latimeria chalumnae ENSLACG00000013206 I 0.000
ENSLOCG00000005679 Lepisosteus oculatus ENSLOCG00000005679 I 0.000
ENSLOCG00000007391 Lepisosteus oculatus ENSLOCG00000007391 I 0.000
ENSLOCG00000011486 Lepisosteus oculatus ENSLOCG00000011486 I 0.000
ENSMEUG00000012808 Macropus eugenii ENSMEUG00000012808 I 0.000
ENSMPUG00000006036 Mustela putorius furo ENSMPUG00000006036 I 0.000
ENSMPUG00000013919 Mustela putorius furo ENSMPUG00000013919 I 0.000
ENSNLEG00000016729 Nomascus leucogenys ENSNLEG00000016729 I 0.000
ENSNLEG00000017701 Nomascus leucogenys ENSNLEG00000017701 I 0.000
ENSONIG00000002896 Oreochromis niloticus ENSONIG00000002896 I 0.000
ENSONIG00000005114 Oreochromis niloticus ENSONIG00000005114 I 0.000
ENSONIG00000008657 Oreochromis niloticus ENSONIG00000008657 I 0.000
ENSONIG00000010871 Oreochromis niloticus ENSONIG00000010871 I 0.000
ENSP00000302812 Macaca fascicularis ENSP00000302812 I 0.000
ENSPANG00000014421 Papio anubis ENSPANG00000014421 I 0.000
ENSPANG00000016221 Papio anubis ENSPANG00000016221 I 0.000
ENSPANG00000023061 Papio anubis ENSPANG00000023061 I 0.000
ENSPFOG00000001566 Poecilia formosa ENSPFOG00000001566 I 0.000
ENSPFOG00000007998 Poecilia formosa ENSPFOG00000007998 I 0.000
ENSPFOG00000013459 Poecilia formosa ENSPFOG00000013459 I 0.000
ENSPPYG00000017747 Pongo abelii ENSPPYG00000017747 I 0.000
ENSSHAG00000005844 Sarcophilus harrisii ENSSHAG00000005844 I 0.000
ENSSSCG00000000269 Sus scrofa ENSSSCG00000000269 I 0.000
ENSSSCG00000029407 Sus scrofa ENSSSCG00000029407 I 0.000
ENSSTOG00000025061 Ictidomys tridecemlineatus ENSSTOG00000025061 I 0.000
ENSSTOG00000028058 Ictidomys tridecemlineatus ENSSTOG00000028058 I 0.000
ENSTGUG00000002679 Taeniopygia guttata ENSTGUG00000002679 I 0.000
ENSXMAG00000000590 Xiphophorus maculatus ENSXMAG00000000590 I 0.000
ENSXMAG00000005380 Xiphophorus maculatus ENSXMAG00000005380 I 0.000
ENSXMAG00000017840 Xiphophorus maculatus ENSXMAG00000017840 I 0.000
estExt_fgenesh2_pg.C_1190037 Branchiostoma floridae estExt_fgenesh2_pg.C_1190037 I 0.000
estExt_fgenesh2_pg.C_1190051 Branchiostoma floridae estExt_fgenesh2_pg.C_1190051 I 0.000
estExt_fgenesh2_pg.C_1820063 Branchiostoma floridae estExt_fgenesh2_pg.C_1820063 I 0.000
e_gw.339.61.1 Branchiostoma floridae e_gw.339.61.1 I 0.000
GA12282 Drosophila pseudoobscura FBgn0072328 I 0.000
GE17808 Drosophila yakuba FBgn0235250 I 0.000
GF22533 Drosophila ananassae FBgn0099527 I 0.000
GG18323 Drosophila erecta FBgn0110539 I 0.000
GH11802 Drosophila grimshawi FBgn0119282 I 0.000
GI15983 Drosophila mojavensis FBgn0138732 I 0.000
GK25356 Drosophila willistoni FBgn0227315 I 0.000
GL16372 Drosophila persimilis FBgn0153976 I 0.000
GM11386 Drosophila sechellia FBgn0166329 I 0.000
HHAL010843-PA Halyomorpha halys HHAL010843-PA I 0.000
HMEL005340 Heliconius melpomene HMEL005340 I 0.000
ISCW023685 Ixodes scapularis ISCW023685 I 0.000
KGM_00012 Danaus plexippus KGM_00012 I 0.000
L798_09167 Zootermopsis nevadensis L798_09167 I 0.000
LCUP010370 Lucilia cuprina LCUP010370 I 0.000
LDEC008343 Leptinotarsa decemlineata LDEC008343 I 0.000
LLOJ007007 Lutzomyia longipalpis LLOJ007007 I 0.000
LotgiG126754 Lottia gigantea LotgiG126754 I 0.000
LotgiG58476 Lottia gigantea LotgiG58476 I 0.000
MCINX013792 Melitaea cinxia MCINX013792 I 0.000
MESCA000017 Megaselia scalaris MESCA000017 I 0.000
Myotis_brandtii_SP7_10022993 Myotis brandtii Myotis_brandtii_SP7_10022993 I 0.000
NEMVEDRAFT_v1g27142 Nematostella vectensis NEMVEDRAFT_v1g27142 I 0.000
NV12527 Nasonia vitripennis NV12527 I 0.000
Ocbimv22028511m.g Octopus bimaculoides Ocbimv22028511m.g I 0.000
Ocbimv22028516m.g Octopus bimaculoides Ocbimv22028516m.g I 0.000
Ogr12594 Ophisaurus gracilis Ogr12594 I 0.000
Ogr16980 Ophisaurus gracilis Ogr16980 I 0.000
PHUM453610 Pediculus humanus PHUM453610 I 0.000
PPAI004544 Phlebotomus papatasi PPAI004544 I 0.000
PPAI008544 Phlebotomus papatasi PPAI008544 I 0.000
Pvit_07436 Pogona vitticeps Pvit_07436 I 0.000
Pvit_11839 Pogona vitticeps Pvit_11839 I 0.000
RPRC004788 Rhodnius prolixus RPRC004788 I 0.000
Sakowv30026942m.g Saccoglossus kowalevskii Sakowv30026942m.g I 0.000
SINV13577 Solenopsis invicta SINV13577 I 0.000
SMAR004954 Strigamia maritima SMAR004954 I 0.000
Sp1 Drosophila melanogaster FBgn0020378 D 0.000
SP6 Anolis carolinensis ENSACAG00000006831 I 0.000
SP7 Anolis carolinensis ENSACAG00000000606 I 0.000
SP7 Bos taurus ENSBTAG00000033292 I 0.000
SP7 Canis familiaris ENSCAFG00000025559 I 0.000
SP7 Callithrix jacchus ENSCJAG00000018549 I 0.000
sp7 Danio rerio ENSDARG00000019516 I 0.000
SP7 Dasypus novemcinctus ENSDNOG00000013009 I 0.000
SP7 Equus caballus ENSECAG00000020140 I 0.000
SP7 Felis catus ENSFCAG00000030976 I 0.000
SP7 Homo sapiens ENSG00000170374 D 0.000
sp7 Gasterosteus aculeatus ENSGACG00000006641 I 0.000
SP7 Gorilla gorilla ENSGGOG00000015818 I 0.000
SP7 Loxodonta africana ENSLAFG00000013129 I 0.000
SP7 Macaca mulatta ENSMMUG00000022039 I 0.000
Sp7 Mus musculus ENSMUSG00000060284 D 0.000
SP7 Oryctolagus cuniculus ENSOCUG00000003811 I 0.000
SP7 Otolemur garnettii ENSOGAG00000032371 I 0.000
SP7 Ochotona princeps ENSOPRG00000015704 I 0.000
sp7 Oryzias latipes ENSORLG00000005215 I 0.000
SP7 Procavia capensis ENSPCAG00000012545 I 0.000
SP7 Pan troglodytes ENSPTRG00000005013 I 0.000
SP7 Pteropus vampyrus ENSPVAG00000012279 I 0.000
Sp7 Rattus norvegicus ENSRNOG00000014082 I 0.000
sp7 Tetraodon nigroviridis ENSTNIG00000007064 I 0.000
sp7 Takifugu rubripes ENSTRUG00000014417 I 0.000
SP7 Tursiops truncatus ENSTTRG00000002784 I 0.000
sp7 Xenopus tropicalis XB-GENE-954330 I 0.000
sp7.L Xenopus laevis XB-GENE-954333 I 0.000
SP8 Bos taurus ENSBTAG00000002604 I 0.000
SP8 Callithrix jacchus ENSCJAG00000001245 I 0.000
SP8 Cavia porcellus ENSCPOG00000026910 I 0.000
SP8 Erinaceus europaeus ENSEEUG00000000621 I 0.000
SP8 Homo sapiens ENSG00000164651 D 0.000
SP8 Macaca mulatta ENSMMUG00000003722 I 0.000
SP8 Monodelphis domestica ENSMODG00000001375 I 0.000
Sp8 Mus musculus ENSMUSG00000048562 I 0.000
SP8 Pan troglodytes ENSPTRG00000018968 I 0.000
SP8 Pteropus vampyrus ENSPVAG00000005109 I 0.000
Sp8 Rattus norvegicus ENSRNOG00000005943 I 0.000
SP8 Tetraodon nigroviridis ENSTNIG00000002903 I 0.000
SP8 Takifugu rubripes ENSTRUG00000008153 I 0.000
SP8 Tursiops truncatus ENSTTRG00000013387 I 0.000
sp8.L Xenopus laevis XB-GENE-1216193 I 0.000
sp8a Danio rerio ENSDARG00000011870 I 0.000
sp8b Danio rerio ENSDARG00000056666 I 0.000
sp8b Gasterosteus aculeatus ENSGACG00000008062 I 0.000
sp8b Oryzias latipes ENSORLG00000007242 I 0.000
sp8b Tetraodon nigroviridis ENSTNIG00000018442 I 0.000
sp8b Takifugu rubripes ENSTRUG00000015810 I 0.000
SP9 Bos taurus ENSBTAG00000014949 I 0.000
sp9 Danio rerio ENSDARG00000099374 I 0.000
SP9 Dasypus novemcinctus ENSDNOG00000019150 I 0.000
SP9 Homo sapiens ENSG00000217236 D 0.000
SP9 Gasterosteus aculeatus ENSGACG00000004757 I 0.000
SP9 Gorilla gorilla ENSGGOG00000007345 I 0.000
SP9 Macaca mulatta ENSMMUG00000023005 I 0.000
SP9 Monodelphis domestica ENSMODG00000009303 I 0.000
Sp9 Mus musculus ENSMUSG00000068859 I 0.000
SP9 Otolemur garnettii ENSOGAG00000034062 I 0.000
SP9 Oryzias latipes ENSORLG00000017492 I 0.000
SP9 Procavia capensis ENSPCAG00000012721 I 0.000
Sp9 Rattus norvegicus ENSRNOG00000028187 I 0.000
SP9 Tetraodon nigroviridis ENSTNIG00000016949 I 0.000
SP9 Takifugu rubripes ENSTRUG00000017609 I 0.000
sp9 Xenopus tropicalis XB-GENE-5931012 I 0.000
SPU_011280 Strongylocentrotus purpuratus SPU_011280 I 0.000
SPU_016114 Strongylocentrotus purpuratus SPU_016114 I 0.000
TC011697 Tribolium castaneum TC011697 I 0.000
XP_002933331 Xenopus tropicalis XP_002933331 I 0.000
XP_002933332 Xenopus tropicalis XP_002933332 I 0.000
XP_002933333 Xenopus tropicalis XP_002933333 I 0.000
YQE_04342 Dendroctonus ponderosae YQE_04342 I 0.000