Al_scaffold_0008_21 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Al_scaffold_0008_21 T247833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.962 0.957
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.962 0.957
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.962 0.957
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_21 MADF 308 379

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB009198 Anopheles albimanus AALB009198 N
AARA001756 Anopheles arabiensis AARA001756 N
ACEP13417 Atta cephalotes ACEP13417 N
ADIR009951 Anopheles dirus ADIR009951 N
Alligator_sinensis_CCG018454.1 Alligator sinensis Alligator_sinensis_CCG018454.1 N
AMAM021135 Anopheles maculatus AMAM021135 N
ANCCAN_13802 Ancylostoma caninum ANCCAN_13802 N
ANCDUO_07508 Ancylostoma duodenale ANCDUO_07508 N
ASTEI05791 Anopheles stephensi ASTEI05791 N
BTMF_0001537801 Brugia timori BTMF_0001537801 N
CLEC011939 Cimex lectularius CLEC011939 N
D917_03218 Trichinella nativa D917_03218 N
ECANG7_05483 Echinococcus canadensis ECANG7_05483 N
ECPE_0000807901 Echinostoma caproni ECPE_0000807901 N
ENSCPOG00000025550 Cavia porcellus ENSCPOG00000025550 N
ENSGMOG00000000145 Gadus morhua ENSGMOG00000000145 N
ENSLACG00000015786 Latimeria chalumnae ENSLACG00000015786 N
ENSMEUG00000007408 Macropus eugenii ENSMEUG00000007408 N
ENSMLUG00000027631 Myotis lucifugus ENSMLUG00000027631 N
ENSMPUG00000011382 Mustela putorius furo ENSMPUG00000011382 N
ENSSHAG00000004201 Sarcophilus harrisii ENSSHAG00000004201 N
ENSSTOG00000027399 Ictidomys tridecemlineatus ENSSTOG00000027399 I
ENSTNIG00000017808 Tetraodon nigroviridis ENSTNIG00000017808 N
ENSXMAG00000013401 Xiphophorus maculatus ENSXMAG00000013401 N
Gfo_R008500 Geospiza fortis Gfo_R008500 N
GPLIN_000910900 Globodera pallida GPLIN_000910900 N
HmN_000740000 Hymenolepis microstoma HmN_000740000 N
L889_g1190 Steinernema feltiae L889_g1190 N
LCUP010714 Lucilia cuprina LCUP010714 N
LDEC018872 Leptinotarsa decemlineata LDEC018872 N
MESCA007328 Megaselia scalaris MESCA007328 N
Myotis_brandtii_Zic5_10007324 Myotis brandtii Myotis_brandtii_Zic5_10007324 N
nDi.2.2.2.g11925 Dirofilaria immitis nDi.2.2.2.g11925 N
Ocbimv22019249m.g Octopus bimaculoides Ocbimv22019249m.g N
OFLC_0000964601 Onchocerca flexuosa OFLC_0000964601 N
PPAI004317 Phlebotomus papatasi PPAI004317 N
scaffold799-EXSNAP2012.6 Pristionchus exspectatus scaffold799-EXSNAP2012.6 N
SMAR010285 Strigamia maritima SMAR010285 N
TASK_0000258201 Taenia asiatica TASK_0000258201 N
TELCIR_23243 Teladorsagia circumcincta TELCIR_23243 N
TRE_0000458501 Trichobilharzia regenti TRE_0000458501 N
TsM_000643500 Taenia solium TsM_000643500 N
WUBG_07674 Wuchereria bancrofti WUBG_07674 N
YQE_06158 Dendroctonus ponderosae YQE_06158 N
ZIC1 Homo sapiens ENSG00000152977 D
ZIC3 Macaca mulatta ENSMMUG00000002023 N
ZIC4 Homo sapiens ENSG00000174963 D
ZIC5 Loxodonta africana ENSLAFG00000009640 N
ZIC5 Otolemur garnettii ENSOGAG00000024269 N