AMTR_s00001p00251940 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00001p00251940 T247834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.837 0.716
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.837 0.716
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.812 0.687
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM96444 MADF 335 404

Links

Other MADF family TFs
Other Amborella trichopoda TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA025162 Oryza indica BGIOSGA025162 I
Bo5g062580 Brassica oleracea Bo5g062580 I
Bo6g107240 Brassica oleracea Bo6g107240 I
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I
Bra032365 Brassica rapa Bra032365 I
BRC1 Vitis vinifera VIT_17s0000g04180 I
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I
Cla020670 Citrullus lanatus Cla020670 I
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I
Lus10017856.g Linum usitatissimum Lus10017856.g I
Lus10038512.g Linum usitatissimum Lus10038512.g I
Lus10042962.g Linum usitatissimum Lus10042962.g I
mgf014960m Mimulus guttatus mgf014960m I
mgf025386m Mimulus guttatus mgf025386m I
MTR_7g015010 Medicago truncatula MTR_7g015010 I
OBART07G03380 Oryza barthii OBART07G03380 I
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I
ONIVA07G01330 Oryza nivara ONIVA07G01330 I
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I
OS07G0152000 Oryza sativa OS07G0152000 I
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I
TCP24 Arabidopsis thaliana AT1G30210 D
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I