Bra026903 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra026903 T248028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.968 0.771
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.965 0.800
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.964 0.771
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.964 0.771
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.964 0.771
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.961 0.629
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.946 0.771
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.945 0.757
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.944 0.643
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.944 0.643
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.944 0.643
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.939 0.614
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.930 0.671
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.920 0.771
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.915 0.714
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.886 0.471
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026903.1-P MADF 84 167

Links

Other MADF family TFs
Other Brassica rapa TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004704 Ricinus communis 29929.m004704 D 0.915
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.946
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.931
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.934
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.907
Bo2g138840 Brassica oleracea Bo2g138840 I 0.893
Bo5g017510 Brassica oleracea Bo5g017510 I 0.962
Bo8g107400 Brassica oleracea Bo8g107400 I 0.956
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.917
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.966
Bra019721 Brassica rapa Bra019721 I 0.962
Bra036354 Brassica rapa Bra036354 I 0.893
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.968
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.902
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.968
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.902
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.946
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.946
Ca_11315 Cicer arietinum Ca_11315 I 0.939
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.939
Cla023054 Citrullus lanatus Cla023054 I 0.961
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.956
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.931
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.920
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.959
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.933
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.930
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.939
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.939
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.946
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.951
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.945
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.925
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.904
GT-1 Arabidopsis thaliana AT1G13450 D 0.965
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.968
GT-4 Arabidopsis thaliana AT3G25990 D 0.944
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.961
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.932
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.929
MDP0000164819 Malus domestica MDP0000164819 D 0.965
MDP0000275412 Malus domestica MDP0000275412 I 0.885
mgf016368m Mimulus guttatus mgf016368m I 0.900
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.948
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.961
OB04G23970 Oryza brachyantha OB04G23970 I 0.919
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.939
OS04G0486400 Oryza sativa OS04G0486400 D 0.945
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.917
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.951
PK20543.1 Cannabis sativa PK20543.1 D 0.920
Pm006885 Prunus mume Pm006885 I 0.965
Pm016214 Prunus mume Pm016214 I 0.890
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.945
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.946
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.890
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.957
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.939
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.936
Si010147m.g Setaria italica Si010147m.g I 0.940
Si036121m.g Setaria italica Si036121m.g I 0.945
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.908
TCM_010751 Theobroma cacao TCM_010751 I 0.951
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.930
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.969
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.939
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.939
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.886