PGSC0003DMG400007806 (Solanum tuberosum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 PGSC0003DMG400007806 T249620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.915 0.703
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.915 0.703
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400020194 MADF 109 191
PGSC0003DMT400020195 MADF 109 191
PGSC0003DMT400020196 MADF 109 191
PGSC0003DMT400020197 MADF 109 191

Links

Other MADF family TFs
Other Solanum tuberosum TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000741 Ricinus communis 29814.m000741 I 0.817
29900.m001628 Ricinus communis 29900.m001628 I 0.898
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.915
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.844
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.844
Bo3g065930 Brassica oleracea Bo3g065930 I 0.816
Bo6g075950 Brassica oleracea Bo6g075950 I 0.915
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.915
Bra003346 Brassica rapa Bra003346 I 0.915
Bra007407 Brassica rapa Bra007407 I 0.876
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.842
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.914
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.914
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.898
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.898
Ca_00394 Cicer arietinum Ca_00394 I 0.939
Ca_02494 Cicer arietinum Ca_02494 N 0.830
Ca_19877 Cicer arietinum Ca_19877 I 0.908
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.949
Cla002288 Citrullus lanatus Cla002288 I 0.866
Cla009854 Citrullus lanatus Cla009854 I 0.957
Cla019967 Citrullus lanatus Cla019967 I 0.836
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.834
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.836
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.836
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.923
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.948
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.914
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.933
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.875
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.939
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.888
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.939
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.938
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.829
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.852
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.867
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.857
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.918
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.815
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.896
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.911
MDP0000301451 Malus domestica MDP0000301451 I 0.934
mgf001239m Mimulus guttatus mgf001239m N 0.838
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.927
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.912
OBART05G25610 Oryza barthii OBART05G25610 I 0.844
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.844
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.844
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.844
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.829
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.949
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.844
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.844
OS05G0560600 Oryza sativa OS05G0560600 I 0.844
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.829
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.829
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.880
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.837
PK27986.1 Cannabis sativa PK27986.1 I 0.922
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.935
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.905
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.815
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.928
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.927
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.880
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.929
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.815
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.829
Si022565m.g Setaria italica Si022565m.g I 0.829
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.894
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.949
TCM_029695 Theobroma cacao TCM_029695 I 0.938
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.915
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.905
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.954