PGSC0003DMG400037972 (Solanum tuberosum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 PGSC0003DMG400037972 T249630_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.823 0.736
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400088401 MADF 79 157

Links

Other MADF family TFs
Other Solanum tuberosum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I 0.900
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.877
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.855
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.918
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.817
ASIL2 Arabidopsis thaliana AT3G14180 D 0.823
Bo1g134590 Brassica oleracea Bo1g134590 I 0.820
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.895
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.823
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.817
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.830
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.823
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.823
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.814
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.900
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.939
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.900
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.937
Cla015773 Citrullus lanatus Cla015773 I 0.920
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.920
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.817
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.895
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.823
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.906
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.817
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.920
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.859
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.945
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.932
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.819
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.836
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.847
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.876
MDP0000097759 Malus domestica MDP0000097759 N 0.815
MDP0000255104 Malus domestica MDP0000255104 I 0.901
MDP0000281471 Malus domestica MDP0000281471 I 0.901
mgf000047m Mimulus guttatus mgf000047m I 0.813
mgf006505m Mimulus guttatus mgf006505m I 0.814
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.869
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.937
PK22475.1 Cannabis sativa PK22475.1 N 0.886
Pm013209 Prunus mume Pm013209 I 0.903
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.895
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.905
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.903
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.887
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.895
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.895
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.958
TCM_029209 Theobroma cacao TCM_029209 I 0.898
TCM_042467 Theobroma cacao TCM_042467 N 0.827
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.823
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.855
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.915