gene01828-v1.0-hybrid (Fragaria vesca)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 gene01828-v1.0-hybrid T250680_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.902 0.800
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.902 0.800
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01828.1-v1.0-hybrid MADF 106 176
mrna01828.1-v1.0-hybrid MADF 514 583

Links

Other MADF family TFs
Other Fragaria vesca TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06543 Capronia coronata A1O1_06543 N
A1O3_09900 Capronia epimyces A1O3_09900 N
A1O7_06461 Cladophialophora yegresii A1O7_06461 N
A1O9_11059 Exophiala aquamarina A1O9_11059 N
ACLA_051570 Aspergillus clavatus CADACLAG00004490 N
AFUA_4G12570 Aspergillus fumigatus CADAFUAG00007816 N
ANIA_03684 Aspergillus nidulans CADANIAG00005047 N
ATEG_03142 Aspergillus terreus CADATEAG00010079 N
AUEXF2481DRAFT_142262 Aureobasidium subglaciale AUEXF2481DRAFT_142262 N
Bcin11g03660 Botrytis cinerea Bcin11g03660 N
BDDG_01240 Blastomyces dermatitidis BDDG_01240 N
CADANGAG00000804 Aspergillus niger CADANGAG00000804 N
CIMG_07019 Coccidioides immitis CIMG_07019 N
COCC4DRAFT_55380 Bipolaris maydis COCC4DRAFT_55380 N
COCCADRAFT_99015 Bipolaris zeicola COCCADRAFT_99015 N
COCMIDRAFT_99482 Bipolaris oryzae COCMIDRAFT_99482 N
COCSADRAFT_211993 Bipolaris sorokiniana COCSADRAFT_211993 N
COCVIDRAFT_21525 Bipolaris victoriae COCVIDRAFT_21525 N
CPC735_033770 Coccidioides posadasii CPC735_033770 N
DOTSEDRAFT_68895 Dothistroma septosporum DOTSEDRAFT_68895 N
EPUS_04103 Endocarpon pusillum EPUS_04103 N
EURHEDRAFT_517376 Aspergillus ruber EURHEDRAFT_517376 N
EV44_g5846 Erysiphe necator EV44_g5846 N
fgenesh1_pg.00009_#_431 Aspergillus carbonarius fgenesh1_pg.00009_#_431 N
G647_06072 Cladophialophora carrionii G647_06072 N
GMDG_00382 Pseudogymnoascus destructans GMDG_00382 N
H101_01266 Trichophyton interdigitale H101_01266 N
H102_00886 Trichophyton rubrum H102_00886 N
H105_00892 Trichophyton soudanense H105_00892 N
HCBG_03684 Histoplasma capsulatum HCBG_03684 N
HMPREF1120_04204 Exophiala dermatitidis HMPREF1120_04204 N
LEMA_P037490.1 Leptosphaeria maculans LEMA_P037490.1 N
M437DRAFT_75276 Aureobasidium melanogenum M437DRAFT_75276 N
M438DRAFT_372082 Aureobasidium pullulans M438DRAFT_372082 N
MBM_09638 Marssonina brunnea MBM_09638 N
MCYG_01483 Microsporum canis MCYG_01483 N
MCYG_01483 Arthroderma otae MCYG_01483 N
MGYG_04587 Microsporum gypseum MGYG_04587 N
MPH_06015 Macrophomina phaseolina MPH_06015 N
OIDMADRAFT_53432 Oidiodendron maius OIDMADRAFT_53432 N
PAAG_08662 Paracoccidioides sp lutzii PAAG_08662 N
PABG_03829 Paracoccidioides brasiliensis PABG_03829 N
Pc22g04580 Penicillium chrysogenum Pc22g04580 N
PCH_Pc22g04580 Penicillium rubens PCH_Pc22g04580 N
PDE_08589 Penicillium oxalicum PDE_08589 N
PMAA_043240 Penicillium marneffei PMAA_043240 N
PMAA_043240 Talaromyces marneffei PMAA_043240 N
PTRG_03145 Pyrenophora triticirepentis PTRG_03145 N
PTT_13566 Pyrenophora teres PTT_13566 N
PV04_06870 Capronia semiimmersa PV04_06870 N
PV05_08216 Exophiala xenobiotica PV05_08216 N
PV06_01931 Exophiala oligosperma PV06_01931 N
PV07_03010 Cladophialophora immunda PV07_03010 N
PV08_02666 Exophiala spinifera PV08_02666 N
PV10_08266 Exophiala mesophila PV10_08266 N
PV11_07147 Exophiala sideris PV11_07147 N
SAPIO_CDS0868 Scedosporium apiospermum SAPIO_CDS0868 N
SBOR_7395 Sclerotinia borealis SBOR_7395 N
SEPMUDRAFT_58051 Sphaerulina musiva SEPMUDRAFT_58051 N
SETTUDRAFT_162963 Setosphaeria turcica SETTUDRAFT_162963 N
TEQG_07593 Trichophyton equinum TEQG_07593 N
TESG_07181 Trichophyton tonsurans TESG_07181 N
TRV_02593 Trichophyton verrucosum TRV_02593 N
TSTA_076850 Talaromyces stipitatus TSTA_076850 N
U727_0043414001 Penicillium solitum U727_0043414001 N
UCRNP2_5033 Neofusicoccum parvum UCRNP2_5033 N
UREG_05846 Uncinocarpus reesii UREG_05846 N
W97_00260 Coniosporium apollinis W97_00260 N
Z517_05635 Fonsecaea pedrosoi Z517_05635 N
Z518_05835 Rhinocladiella mackenziei Z518_05835 N