CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

orange1.1g007316m.g *(Citrus sinensis)* MADF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF10545 (MADF_DNA_bdg)	IPR006578	orange1.1g007316m.g	T250791_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT-GTL1 M06968_2.00	Arabidopsis thaliana	RHRGTAAAWW	WWTTTACYDY	Dap-seq OMalley et al.(2016) GTL1_col_a	0.873	0.696
PK15172.1 M01263_2.00	Cannabis sativa	NNNGTWAHWN	NWDTWACNNN	PBM Lambert et al.(2019) pTH10125	0.932	0.757
AT-GTL1 M06969_2.00	Arabidopsis thaliana	RHRGTAAAWW	WWTTTACYDY	Dap-seq OMalley et al.(2016) GTL1_colamp_a	0.873	0.696
OS02G0104500 M02271_2.00	Oryza sativa	NDGTAAWWHN	NDWWTTACHN	PBM Weirauch et al.(2014) pTH8719	0.898	0.700
AT1G76880 M06970_2.00	Arabidopsis thaliana	RHRGTAAAAWNDDDWW	WWHHHNWTTTTACYDY	Dap-seq OMalley et al.(2016) AT1G76880_col_a	0.815	0.674
OS02G0104500 M02272_2.00	Oryza sativa	NDGTAAWWHN	NDWWTTACHN	PBM Weirauch et al.(2014) pTH9273	0.898	0.700
For this family, TFs with SR scores > 0.812* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
orange1.1g007316m	MADF	85	155	DMDQVFRDSSLKGPLWEEISRKLAELGYNRSAKKCKEKFENVYKYHRRTKDGRTGKPEGKHYKFFDQLEAL
orange1.1g007316m	MADF	427	499	TELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKRPDDSKTCPYFDQLDAL
orange1.1g013876m	MADF	253	325	TELANKYQENGPKGPLWEEIAAAMRSVGYNRNAKRCKEKWENINKYFKKVKESNKKRPDDSKTCPYFDQLDAL

Links
Other MADF family TFs
Other *Citrus sinensis* TFs