Thhalv10000907m.g (Eutrema salsugineum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Thhalv10000907m.g T250863_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.911 0.795
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.911 0.795
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.911 0.795
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10000907m MADF 309 384

Links

Other MADF family TFs
Other Eutrema salsugineum TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.884
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.911
Bo2g133550 Brassica oleracea Bo2g133550 I 0.862
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.902
Bra022149 Brassica rapa Bra022149 I 0.849
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.890
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.890