Cagra.4348s0011 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.4348s0011 T257704_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.729 0.729
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4348s0011.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026544 Oryza indica BGIOSGA026544 N
BGIOSGA026545 Oryza indica BGIOSGA026545 N
BRADI1G77120 Brachypodium distachyon BRADI1G77120 N
BRADI3G57360 Brachypodium distachyon BRADI3G57360 I
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I
DREB1A Oryza sativa OS09G0522200 D
DREB1A Oryza indica BGIOSGA029415 I
F775_27111 Aegilops tauschii F775_27111 I
GRMZM2G069082 Zea mays GRMZM2G069082 I
GRMZM2G069126 Zea mays GRMZM2G069126 I
GRMZM2G069146 Zea mays GRMZM2G069146 I
GRMZM2G124037 Zea mays GRMZM2G124037 I
GRMZM2G175856 Zea mays GRMZM2G175856 N
LPERR09G12950 Leersia perrieri LPERR09G12950 I
OBART09G16810 Oryza barthii OBART09G16810 I
OBART09G16830 Oryza barthii OBART09G16830 I
OGLUM08G23770 Oryza glumaepatula OGLUM08G23770 N
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I
OMERI09G12490 Oryza meridionalis OMERI09G12490 I
ONIVA09G17900 Oryza nivara ONIVA09G17900 I
OPUNC09G15260 Oryza punctata OPUNC09G15260 I
OPUNC09G15290 Oryza punctata OPUNC09G15290 I
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I
ORGLA08G0220200 Oryza glaberrima ORGLA08G0220200 N
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I
Pavir.Fa00114 Panicum virgatum Pavir.Fa00114 N
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I
Pavir.J03891 Panicum virgatum Pavir.J03891 I
Pavir.J03892 Panicum virgatum Pavir.J03892 I
Pavir.J03893 Panicum virgatum Pavir.J03893 I
Pavir.J27101 Panicum virgatum Pavir.J27101 I
Pavir.J32829 Panicum virgatum Pavir.J32829 N
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D
Q8W236_WHEAT Triticum aestivum Q8W236_WHEAT D
Sb02g030300 Sorghum bicolor Sb02g030300 I
Sb02g030320 Sorghum bicolor Sb02g030320 I
Sb02g030330 Sorghum bicolor Sb02g030330 I
Sb02g030340 Sorghum bicolor Sb02g030340 I
Sb05g006275 Sorghum bicolor Sb05g006275 I
Sb07g025210 Sorghum bicolor Sb07g025210 N
Si030998m.g Setaria italica Si030998m.g I
Si031001m.g Setaria italica Si031001m.g I
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I